miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 3' -59.1 NC_004084.1 + 17048 0.66 0.606583
Target:  5'- cCGUCGAugcggugacugaCGUCGCaaGCGGuGUUCGAGa -3'
miRNA:   3'- -GCAGCU------------GCAGCGgcCGCU-CGAGCUCc -5'
16502 3' -59.1 NC_004084.1 + 17680 0.66 0.596169
Target:  5'- ---gGGCGaCGCUGGuCGAGCUuCGAGa -3'
miRNA:   3'- gcagCUGCaGCGGCC-GCUCGA-GCUCc -5'
16502 3' -59.1 NC_004084.1 + 41784 0.66 0.594089
Target:  5'- aCGUCGACGaCGagGGCGucacgaucgacCUCGAGGa -3'
miRNA:   3'- -GCAGCUGCaGCggCCGCuc---------GAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 7080 0.66 0.585782
Target:  5'- cCGUCGACGaagaucUCGCgGGCGcaCUCGAu- -3'
miRNA:   3'- -GCAGCUGC------AGCGgCCGCucGAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 58127 0.66 0.585782
Target:  5'- uCGUCGGCgGUCGUCGuCGAGCcgccgUGAGu -3'
miRNA:   3'- -GCAGCUG-CAGCGGCcGCUCGa----GCUCc -5'
16502 3' -59.1 NC_004084.1 + 25392 0.66 0.581637
Target:  5'- aGUCGAgGUCGagcugcuccugaaCGGUGGucucCUCGAGGg -3'
miRNA:   3'- gCAGCUgCAGCg------------GCCGCUc---GAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 9720 0.66 0.575431
Target:  5'- ---gGACGUCGCCGGa---UUCGAGGc -3'
miRNA:   3'- gcagCUGCAGCGGCCgcucGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 26122 0.66 0.575431
Target:  5'- gGUCGcgacgaucGCGUUGUCGGUGAGCaCGcccAGGu -3'
miRNA:   3'- gCAGC--------UGCAGCGGCCGCUCGaGC---UCC- -5'
16502 3' -59.1 NC_004084.1 + 29586 0.66 0.575431
Target:  5'- gGUgGGCGUCGuUCGcGCGcAGUUCGAuGGu -3'
miRNA:   3'- gCAgCUGCAGC-GGC-CGC-UCGAGCU-CC- -5'
16502 3' -59.1 NC_004084.1 + 51650 0.66 0.575431
Target:  5'- -uUCGGCGUucCGCaggaGGCGAugaUCGAGGa -3'
miRNA:   3'- gcAGCUGCA--GCGg---CCGCUcg-AGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 3170 0.66 0.575431
Target:  5'- cCGUaGACGUCGUcgaCGGCGAGgacgugaaCGAGGc -3'
miRNA:   3'- -GCAgCUGCAGCG---GCCGCUCga------GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 28079 0.66 0.575431
Target:  5'- cCGUCGGCcaccUCGCCGaCGgucaacGGUUCGGGGu -3'
miRNA:   3'- -GCAGCUGc---AGCGGCcGC------UCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 51704 0.66 0.575431
Target:  5'- cCGUaccgGACGgacaUCGCCGGCGuugacCUCGAGa -3'
miRNA:   3'- -GCAg---CUGC----AGCGGCCGCuc---GAGCUCc -5'
16502 3' -59.1 NC_004084.1 + 41733 0.66 0.56924
Target:  5'- uCGUCccggaugacgaucggGACGaCGCCGGCGA---CGAGGa -3'
miRNA:   3'- -GCAG---------------CUGCaGCGGCCGCUcgaGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 5572 0.66 0.565121
Target:  5'- uGUCGAgGUCGCCaGCGccgaacGC-CGAGa -3'
miRNA:   3'- gCAGCUgCAGCGGcCGCu-----CGaGCUCc -5'
16502 3' -59.1 NC_004084.1 + 52217 0.66 0.565121
Target:  5'- gCGUCGGucUCGCgagccucgauCGaGaCGAGCUCGAGGu -3'
miRNA:   3'- -GCAGCUgcAGCG----------GC-C-GCUCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 17965 0.66 0.565121
Target:  5'- uGUgGACGUCGUCGGUGucgcccucGGcCUCGAu- -3'
miRNA:   3'- gCAgCUGCAGCGGCCGC--------UC-GAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 49073 0.67 0.55486
Target:  5'- cCGUCGACGUgCGaCGGuCGGGa--GAGGu -3'
miRNA:   3'- -GCAGCUGCA-GCgGCC-GCUCgagCUCC- -5'
16502 3' -59.1 NC_004084.1 + 46691 0.67 0.55486
Target:  5'- -uUCGAgcaCGUCGCCGGCGAcgucuaccGCgaCGAGu -3'
miRNA:   3'- gcAGCU---GCAGCGGCCGCU--------CGa-GCUCc -5'
16502 3' -59.1 NC_004084.1 + 47283 0.67 0.55486
Target:  5'- gGUCGACGaCGuCCaGCG-GCUCuGGGa -3'
miRNA:   3'- gCAGCUGCaGC-GGcCGCuCGAGcUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.