miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 6234 0.66 0.970936
Target:  5'- uUCCGGAuAGCGUCGAUcccGAcGCGGuCGACg -3'
miRNA:   3'- -AGGCUUuUCGUGGCUA---CU-UGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 33315 0.66 0.970936
Target:  5'- uUCCGcacuuGAcGCGCCGA---AUGACGACc -3'
miRNA:   3'- -AGGCu----UUuCGUGGCUacuUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 2262 0.66 0.970936
Target:  5'- cUCCGAAAgcuggaggagauGGgGCUGGUcGAcgcCGACGACa -3'
miRNA:   3'- -AGGCUUU------------UCgUGGCUA-CUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 57010 0.66 0.970936
Target:  5'- gCCGAGAauGGCgacGCCGGUGAuaaugagUGAUGAUa -3'
miRNA:   3'- aGGCUUU--UCG---UGGCUACUu------GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 45762 0.66 0.970936
Target:  5'- cUCGAucGGGaCGCCGAUGGaggucAUGugGGCg -3'
miRNA:   3'- aGGCUu-UUC-GUGGCUACU-----UGCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 57631 0.66 0.970936
Target:  5'- cUCGAccaacacaAGGGCGaCGAUGAAuCGugGACg -3'
miRNA:   3'- aGGCU--------UUUCGUgGCUACUU-GCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 45078 0.66 0.970936
Target:  5'- aUCUGu--GGCG-CGAUGAACGACa-- -3'
miRNA:   3'- -AGGCuuuUCGUgGCUACUUGCUGcug -5'
16505 5' -49.5 NC_004084.1 + 30279 0.66 0.970936
Target:  5'- gCCGA--AGUAUCGA--GACGAgGACg -3'
miRNA:   3'- aGGCUuuUCGUGGCUacUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 36530 0.66 0.970936
Target:  5'- aCCGAGA--CGCCGAUcgcgacaacGGuauCGACGACg -3'
miRNA:   3'- aGGCUUUucGUGGCUA---------CUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 27262 0.66 0.970936
Target:  5'- cCCGGAuguCGCCGAaaggugUGAACGAUGuCg -3'
miRNA:   3'- aGGCUUuucGUGGCU------ACUUGCUGCuG- -5'
16505 5' -49.5 NC_004084.1 + 48012 0.66 0.970936
Target:  5'- -gCGAGAuGGUcgaCGAccUGGACGACGACg -3'
miRNA:   3'- agGCUUU-UCGug-GCU--ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 36016 0.66 0.970617
Target:  5'- gCCGAGAAGCGugaucguCCGGU-AGCGuuCGACc -3'
miRNA:   3'- aGGCUUUUCGU-------GGCUAcUUGCu-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 38266 0.66 0.969973
Target:  5'- gCUGAGAcucaucaguGCACCGAaccUGAauacaucgcuacugACGGCGGCg -3'
miRNA:   3'- aGGCUUUu--------CGUGGCU---ACU--------------UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 9717 0.66 0.967637
Target:  5'- gCCGA----CGCCGAUGc-CGGCGGCu -3'
miRNA:   3'- aGGCUuuucGUGGCUACuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12782 0.66 0.967637
Target:  5'- aUCCGAGA--CGCCGuc-GACGAcCGACa -3'
miRNA:   3'- -AGGCUUUucGUGGCuacUUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 7544 0.66 0.967637
Target:  5'- aUCCaGGAcGGCAUCGAgaaGAACGcCGAg -3'
miRNA:   3'- -AGG-CUUuUCGUGGCUa--CUUGCuGCUg -5'
16505 5' -49.5 NC_004084.1 + 5039 0.66 0.967637
Target:  5'- cCCGAcGAGgGCCGGaucuUGuAGCGGuCGGCg -3'
miRNA:   3'- aGGCUuUUCgUGGCU----AC-UUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 28795 0.66 0.967637
Target:  5'- gUCCGGAgccgacagccAGGUGCCGuuGUGGGCGagcaucGCGACc -3'
miRNA:   3'- -AGGCUU----------UUCGUGGC--UACUUGC------UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 10016 0.66 0.967637
Target:  5'- cUCCGAGAuGGCGgccaCGAUGccGCGuCGACg -3'
miRNA:   3'- -AGGCUUU-UCGUg---GCUACu-UGCuGCUG- -5'
16505 5' -49.5 NC_004084.1 + 16926 0.66 0.967637
Target:  5'- gCCGGGugcgguucGGCAUCGgcGGGCGucGCGACg -3'
miRNA:   3'- aGGCUUu-------UCGUGGCuaCUUGC--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.