Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16593 | 5' | -42.4 | NC_004117.1 | + | 33743 | 0.7 | 0.999978 |
Target: 5'- -gGCAaaucaAAUGAUcgcUCAUcaUGCGCACCa -3' miRNA: 3'- agCGUg----UUAUUAaa-AGUA--ACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 130651 | 0.68 | 1 |
Target: 5'- cUGCuuuuuAUAAUAAUg--UAUUGCGCAUCa -3' miRNA: 3'- aGCG-----UGUUAUUAaaaGUAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 131984 | 0.68 | 1 |
Target: 5'- -gGCACGAUuGUUUugUCAUUG-GCGCg -3' miRNA: 3'- agCGUGUUAuUAAA--AGUAACgCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 118413 | 0.68 | 0.999999 |
Target: 5'- uUCGCGCGAUcGAUUcugcCAgucGCGUGCCg -3' miRNA: 3'- -AGCGUGUUA-UUAAaa--GUaa-CGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 77760 | 0.69 | 0.999999 |
Target: 5'- -gGCGCAAUGGgcaugUUUggUGCGCugUg -3' miRNA: 3'- agCGUGUUAUUaa---AAGuaACGCGugG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 22831 | 0.69 | 0.999996 |
Target: 5'- gCGUGCAAgu-UUUUUAaauguUUGCGCAUCg -3' miRNA: 3'- aGCGUGUUauuAAAAGU-----AACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 131957 | 0.7 | 0.999992 |
Target: 5'- aUCGCACAAUAAUUcUUCAgaaUGgGCu-- -3' miRNA: 3'- -AGCGUGUUAUUAA-AAGUa--ACgCGugg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 148667 | 0.7 | 0.999989 |
Target: 5'- cUUGCACGAUGGUgaaaagAUUGUGUAUCg -3' miRNA: 3'- -AGCGUGUUAUUAaaag--UAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 12327 | 0.7 | 0.999984 |
Target: 5'- -aGCGCAAUGGUgaauagCug-GCGCGCUa -3' miRNA: 3'- agCGUGUUAUUAaaa---GuaaCGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 135612 | 0.67 | 1 |
Target: 5'- gUGCGCAAUGAaaaUUAUUGUGCGa- -3' miRNA: 3'- aGCGUGUUAUUaaaAGUAACGCGUgg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 71377 | 0.67 | 1 |
Target: 5'- uUCGCGCAAaucauagUgAUUGCGCAa- -3' miRNA: 3'- -AGCGUGUUauuaaa-AgUAACGCGUgg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 46158 | 0.67 | 1 |
Target: 5'- aCGCGCA--GAg--UgAUUGCGCuACCc -3' miRNA: 3'- aGCGUGUuaUUaaaAgUAACGCG-UGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 78237 | 0.66 | 1 |
Target: 5'- -aGCucuuCGAUGGUgcauugUUUGUcGCGCGCCa -3' miRNA: 3'- agCGu---GUUAUUAa-----AAGUAaCGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 92897 | 0.66 | 1 |
Target: 5'- aUCGCGCcaaaAAUAcag-UUGUUGCGCugUg -3' miRNA: 3'- -AGCGUG----UUAUuaaaAGUAACGCGugG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 70527 | 0.66 | 1 |
Target: 5'- -aGUACAGccAAUUUUCGUUGUGaGCUa -3' miRNA: 3'- agCGUGUUa-UUAAAAGUAACGCgUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 62644 | 0.66 | 1 |
Target: 5'- cUGUGCAAUAGUUgcuacauuUUCAaUGCGUAUUg -3' miRNA: 3'- aGCGUGUUAUUAA--------AAGUaACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 143398 | 0.66 | 1 |
Target: 5'- gCGUuucaGCAGUAAU--UUAUUGCGUcCCa -3' miRNA: 3'- aGCG----UGUUAUUAaaAGUAACGCGuGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 150213 | 0.66 | 1 |
Target: 5'- aCGCAUAAcGGUcaUCAaaaUGgGCACCg -3' miRNA: 3'- aGCGUGUUaUUAaaAGUa--ACgCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 157505 | 0.67 | 1 |
Target: 5'- aCGUugAAccGUgg-CAUUGCGCAUUa -3' miRNA: 3'- aGCGugUUauUAaaaGUAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 157109 | 0.67 | 1 |
Target: 5'- -aGUACAAUA-------UUGCGCGCCc -3' miRNA: 3'- agCGUGUUAUuaaaaguAACGCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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