miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16666 3' -52.7 NC_004156.1 + 188455 0.66 0.993488
Target:  5'- gUUAGAAaauGCACCaagACCACUcGUGCCc -3'
miRNA:   3'- -AGUUUUgguCGUGG---UGGUGGuCACGG- -5'
16666 3' -52.7 NC_004156.1 + 41120 0.66 0.993488
Target:  5'- cCGAAACCuccacuuGCACCACCGuuuccucccCCAuUGCg -3'
miRNA:   3'- aGUUUUGGu------CGUGGUGGU---------GGUcACGg -5'
16666 3' -52.7 NC_004156.1 + 191351 0.66 0.993488
Target:  5'- cUCAuuAAAC--GCACCGCCuACCuGUGUCu -3'
miRNA:   3'- -AGU--UUUGguCGUGGUGG-UGGuCACGG- -5'
16666 3' -52.7 NC_004156.1 + 125873 0.66 0.993488
Target:  5'- aCGuuGCCGGUAUgACUAUCGGUuGCUu -3'
miRNA:   3'- aGUuuUGGUCGUGgUGGUGGUCA-CGG- -5'
16666 3' -52.7 NC_004156.1 + 23374 0.66 0.993488
Target:  5'- aCAGAGCCuaacgaucGCAUCGCaCGCCuagguGUGCa -3'
miRNA:   3'- aGUUUUGGu-------CGUGGUG-GUGGu----CACGg -5'
16666 3' -52.7 NC_004156.1 + 95065 0.66 0.993488
Target:  5'- aCAGAGcCCAGUACCGuuGCagAG-GCCa -3'
miRNA:   3'- aGUUUU-GGUCGUGGUggUGg-UCaCGG- -5'
16666 3' -52.7 NC_004156.1 + 54054 0.66 0.993209
Target:  5'- aUCGAu-CCAucgGCCACCACCAGguccacuuugacgaUGCCc -3'
miRNA:   3'- -AGUUuuGGUcg-UGGUGGUGGUC--------------ACGG- -5'
16666 3' -52.7 NC_004156.1 + 186271 0.66 0.992522
Target:  5'- gUUAGAGUCGGUugUAagguaacgagucCCACCGGUGCUg -3'
miRNA:   3'- -AGUUUUGGUCGugGU------------GGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 127614 0.66 0.992522
Target:  5'- --uGAACCAGUACCGCgACUAcaUGCa -3'
miRNA:   3'- aguUUUGGUCGUGGUGgUGGUc-ACGg -5'
16666 3' -52.7 NC_004156.1 + 215174 0.66 0.992522
Target:  5'- aCAAGcgucACCuguuGCACCAUCAUCuGUuuGCCa -3'
miRNA:   3'- aGUUU----UGGu---CGUGGUGGUGGuCA--CGG- -5'
16666 3' -52.7 NC_004156.1 + 216628 0.66 0.992522
Target:  5'- aUCGGuACUGGCACCAUagUCGGUGgCCu -3'
miRNA:   3'- -AGUUuUGGUCGUGGUGguGGUCAC-GG- -5'
16666 3' -52.7 NC_004156.1 + 158098 0.66 0.992522
Target:  5'- aUCAAAG-CAGCACUAUgACCGGUa-- -3'
miRNA:   3'- -AGUUUUgGUCGUGGUGgUGGUCAcgg -5'
16666 3' -52.7 NC_004156.1 + 44457 0.66 0.991445
Target:  5'- cUCAAGcACCGGCAUCugCuugggauCgAGUGCa -3'
miRNA:   3'- -AGUUU-UGGUCGUGGugGu------GgUCACGg -5'
16666 3' -52.7 NC_004156.1 + 182036 0.66 0.991445
Target:  5'- ---uGGCCAGUcgGCCACauuCCGGUGUg -3'
miRNA:   3'- aguuUUGGUCG--UGGUGgu-GGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 109276 0.66 0.991445
Target:  5'- aCGAGuCgAGC-CCGCCACaGGUGCa -3'
miRNA:   3'- aGUUUuGgUCGuGGUGGUGgUCACGg -5'
16666 3' -52.7 NC_004156.1 + 49804 0.66 0.991445
Target:  5'- nUAGuACCAGCAUCAgUACUAGU-CCu -3'
miRNA:   3'- aGUUuUGGUCGUGGUgGUGGUCAcGG- -5'
16666 3' -52.7 NC_004156.1 + 130057 0.66 0.991445
Target:  5'- cCAauAAAUCGGCcCUGCCAUCGGUuaugGCCa -3'
miRNA:   3'- aGU--UUUGGUCGuGGUGGUGGUCA----CGG- -5'
16666 3' -52.7 NC_004156.1 + 39813 0.66 0.991331
Target:  5'- ----cGCCGGUuaagaguacACCACCACCuacuaagAGUGCa -3'
miRNA:   3'- aguuuUGGUCG---------UGGUGGUGG-------UCACGg -5'
16666 3' -52.7 NC_004156.1 + 88907 0.66 0.99025
Target:  5'- uUCGu-ACCGGCACU---GCUAGUGCUg -3'
miRNA:   3'- -AGUuuUGGUCGUGGuggUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 11200 0.66 0.99025
Target:  5'- aUCAAAAUCAaUACCAaUACCAaUGCCa -3'
miRNA:   3'- -AGUUUUGGUcGUGGUgGUGGUcACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.