miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16667 5' -54.5 NC_004156.1 + 85367 0.66 0.980086
Target:  5'- aUGCUaACCAaacagaugcGCAUCACCGAUGCCgACUa -3'
miRNA:   3'- aGCGG-UGGU---------UGUGGUGGUUGUGG-UGA- -5'
16667 5' -54.5 NC_004156.1 + 40239 0.66 0.980086
Target:  5'- gCGUCACCAAaGCCaaaACCAGaGCCAUg -3'
miRNA:   3'- aGCGGUGGUUgUGG---UGGUUgUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 213691 0.66 0.980086
Target:  5'- cUCGCCGCUcuuguACAaCACCGACucuUCGCUg -3'
miRNA:   3'- -AGCGGUGGu----UGUgGUGGUUGu--GGUGA- -5'
16667 5' -54.5 NC_004156.1 + 41114 0.66 0.980086
Target:  5'- cCuCCACCGAaaccuCCACUuGCACCACc -3'
miRNA:   3'- aGcGGUGGUUgu---GGUGGuUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 180682 0.66 0.977856
Target:  5'- gUGCaaguucaaCAACACCACCAACaaccgagugcuGCCGCa -3'
miRNA:   3'- aGCGgug-----GUUGUGGUGGUUG-----------UGGUGa -5'
16667 5' -54.5 NC_004156.1 + 68772 0.66 0.977856
Target:  5'- cUCGCCGaCAACGCUcucGCCGACAaCAUa -3'
miRNA:   3'- -AGCGGUgGUUGUGG---UGGUUGUgGUGa -5'
16667 5' -54.5 NC_004156.1 + 104178 0.66 0.977856
Target:  5'- -aGUUugCAucCACCACCAACACUg-- -3'
miRNA:   3'- agCGGugGUu-GUGGUGGUUGUGGuga -5'
16667 5' -54.5 NC_004156.1 + 99922 0.66 0.977856
Target:  5'- aUCGCCAaugcacauuUgAACACCACgAGUGCCGCg -3'
miRNA:   3'- -AGCGGU---------GgUUGUGGUGgUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 123823 0.66 0.977624
Target:  5'- -aGCCGCCucUACCgucuucgGCCAGCuACUACUa -3'
miRNA:   3'- agCGGUGGuuGUGG-------UGGUUG-UGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 161251 0.66 0.975448
Target:  5'- aUGUUACCAucccaaauGCAgUCACCAaagGCACCACUc -3'
miRNA:   3'- aGCGGUGGU--------UGU-GGUGGU---UGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 88907 0.66 0.972853
Target:  5'- uUCG-UACCGGCACUGCUAguGCugCGCUu -3'
miRNA:   3'- -AGCgGUGGUUGUGGUGGU--UGugGUGA- -5'
16667 5' -54.5 NC_004156.1 + 174418 0.66 0.972853
Target:  5'- aCGCgCAUaucCACCAUCAACACgGCg -3'
miRNA:   3'- aGCG-GUGguuGUGGUGGUUGUGgUGa -5'
16667 5' -54.5 NC_004156.1 + 40781 0.66 0.972853
Target:  5'- -aGCCagaGCCAGCGCCcaaGCCuACACC-Ca -3'
miRNA:   3'- agCGG---UGGUUGUGG---UGGuUGUGGuGa -5'
16667 5' -54.5 NC_004156.1 + 150241 0.66 0.972853
Target:  5'- uUCGCCcuCCuuUACguCCAACACUGCg -3'
miRNA:   3'- -AGCGGu-GGuuGUGguGGUUGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 127894 0.66 0.972853
Target:  5'- gUCGUCAUCAACAaugUgGCCAAgACCAa- -3'
miRNA:   3'- -AGCGGUGGUUGU---GgUGGUUgUGGUga -5'
16667 5' -54.5 NC_004156.1 + 178562 0.66 0.970066
Target:  5'- -aGCCACCGGcCACUaugaACCGGCuACCAa- -3'
miRNA:   3'- agCGGUGGUU-GUGG----UGGUUG-UGGUga -5'
16667 5' -54.5 NC_004156.1 + 2495 0.66 0.970066
Target:  5'- gUCGCUACUAcCACUAUCcucGCuACCACUg -3'
miRNA:   3'- -AGCGGUGGUuGUGGUGGu--UG-UGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 221502 0.66 0.970066
Target:  5'- -aGCUuuuCCAACAgacuacCCACCcugaugcuGACACCACUg -3'
miRNA:   3'- agCGGu--GGUUGU------GGUGG--------UUGUGGUGA- -5'
16667 5' -54.5 NC_004156.1 + 114338 0.66 0.96708
Target:  5'- -gGCCGCaaauAUACCgACCGcACACCACc -3'
miRNA:   3'- agCGGUGgu--UGUGG-UGGU-UGUGGUGa -5'
16667 5' -54.5 NC_004156.1 + 150064 0.66 0.96708
Target:  5'- --aCCACCAACacugucucccaaACCACCucucGCAUCGCUa -3'
miRNA:   3'- agcGGUGGUUG------------UGGUGGu---UGUGGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.