miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 5' -53.1 NC_004156.1 + 85898 0.66 0.987461
Target:  5'- cGCagGGUGCUc--GCUACCAGUACCc -3'
miRNA:   3'- aUGg-UCAUGGucuCGAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 103761 0.66 0.987461
Target:  5'- cACCA-UACCaaaAGAG-UGCCAGUGCUAa -3'
miRNA:   3'- aUGGUcAUGG---UCUCgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 171638 0.66 0.985842
Target:  5'- cACCGcUGCUGG-GCUugUGGUGCCAa -3'
miRNA:   3'- aUGGUcAUGGUCuCGAugGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 89147 0.66 0.984797
Target:  5'- gUGCCGGUACgaaacgcaaagcaaaCAGAGCcACCaaagaGGUGCCc -3'
miRNA:   3'- -AUGGUCAUG---------------GUCUCGaUGG-----UCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 91293 0.66 0.98213
Target:  5'- aUGCCAGUGUCaAGAGUggUACUAGUGCa- -3'
miRNA:   3'- -AUGGUCAUGG-UCUCG--AUGGUCAUGgu -5'
16669 5' -53.1 NC_004156.1 + 216735 0.66 0.98213
Target:  5'- aACCAGaAUCGGAauCUACCcGUACCAa -3'
miRNA:   3'- aUGGUCaUGGUCUc-GAUGGuCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 220450 0.66 0.98213
Target:  5'- gACUGGUcaACCAGGGCUuugccuaugccuACCuGUGCUAc -3'
miRNA:   3'- aUGGUCA--UGGUCUCGA------------UGGuCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 23968 0.66 0.9798
Target:  5'- cUACCAGaguauuUACCAGAGUauagcuuUAUCagAGUACCAg -3'
miRNA:   3'- -AUGGUC------AUGGUCUCG-------AUGG--UCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 60337 0.67 0.977731
Target:  5'- gUGCgGGUGCCuGuAGUugUACCAGUguGCCAg -3'
miRNA:   3'- -AUGgUCAUGGuC-UCG--AUGGUCA--UGGU- -5'
16669 5' -53.1 NC_004156.1 + 175948 0.67 0.977731
Target:  5'- --gCGGUACauGGGCU-CCAGUACCAu -3'
miRNA:   3'- augGUCAUGguCUCGAuGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 109169 0.67 0.977492
Target:  5'- aUGCCGGUGCCgagaguAGAGCc-CCAGUcucggcaucgaugACCAc -3'
miRNA:   3'- -AUGGUCAUGG------UCUCGauGGUCA-------------UGGU- -5'
16669 5' -53.1 NC_004156.1 + 217983 0.67 0.975253
Target:  5'- uUACUAG-ACCAGuGCUGCUccgagGGUugCAg -3'
miRNA:   3'- -AUGGUCaUGGUCuCGAUGG-----UCAugGU- -5'
16669 5' -53.1 NC_004156.1 + 66742 0.67 0.97258
Target:  5'- aACCGGUAUaguGGCUcaACCAGUACUg -3'
miRNA:   3'- aUGGUCAUGgucUCGA--UGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 113658 0.67 0.969704
Target:  5'- aGCCAGUagACgAGAuaccgGCCAGUACCGu -3'
miRNA:   3'- aUGGUCA--UGgUCUcga--UGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 68491 0.67 0.969704
Target:  5'- gACUAGUGCCAGcAG-UACCAGcACUg -3'
miRNA:   3'- aUGGUCAUGGUC-UCgAUGGUCaUGGu -5'
16669 5' -53.1 NC_004156.1 + 17678 0.67 0.963319
Target:  5'- gUACUAGUaacacuACUAGuGCUacaACUAGUACCAc -3'
miRNA:   3'- -AUGGUCA------UGGUCuCGA---UGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 52425 0.67 0.962977
Target:  5'- -cCCAGUACgGgcaguaguuuuacGAGC-ACCGGUACCGu -3'
miRNA:   3'- auGGUCAUGgU-------------CUCGaUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 11190 0.68 0.956051
Target:  5'- aUACCAaUACCAa---UGCCAGUACCAa -3'
miRNA:   3'- -AUGGUcAUGGUcucgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 206072 0.68 0.956051
Target:  5'- cACUGGUACCGGuGCUgucACUGGaGCCAa -3'
miRNA:   3'- aUGGUCAUGGUCuCGA---UGGUCaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 112566 0.68 0.955664
Target:  5'- cACCAGUACC-GAGUUugUGGUggacguguacaauGCCAa -3'
miRNA:   3'- aUGGUCAUGGuCUCGAugGUCA-------------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.