miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 39601 0.66 0.93211
Target:  5'- aUCGUCGCGuAUCU-GGCugaauuCGGCAACa -3'
miRNA:   3'- -AGCAGUGCuUGGAgCUGu-----GCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 11812 0.66 0.93211
Target:  5'- aCGaCGCG-GCCaUCaGCGCGACGGCGc -3'
miRNA:   3'- aGCaGUGCuUGG-AGcUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 25188 0.66 0.93211
Target:  5'- gCGUCuCGAACucgcugcgcgaCUCGACGuCGACGcccGCGa -3'
miRNA:   3'- aGCAGuGCUUG-----------GAGCUGU-GCUGU---UGC- -5'
16990 5' -50.9 NC_004333.2 + 22171 0.66 0.93211
Target:  5'- cUUGUCGCcGGCggCGGC-CGGCGGCGg -3'
miRNA:   3'- -AGCAGUGcUUGgaGCUGuGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 30934 0.66 0.93211
Target:  5'- aUCG-CACGAucacguCCggCGAUACGcCGGCGg -3'
miRNA:   3'- -AGCaGUGCUu-----GGa-GCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 32365 0.66 0.93211
Target:  5'- aCGUgCGCaGGCgUCGGCGCGAUcgAACGc -3'
miRNA:   3'- aGCA-GUGcUUGgAGCUGUGCUG--UUGC- -5'
16990 5' -50.9 NC_004333.2 + 41403 0.66 0.93211
Target:  5'- gUCGUaUGCGAucggcuACCUCGAgGCGcGCGACc -3'
miRNA:   3'- -AGCA-GUGCU------UGGAGCUgUGC-UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 25674 0.66 0.926382
Target:  5'- cCGUCGCGAACgCggCGACcUGAuCAGCc -3'
miRNA:   3'- aGCAGUGCUUG-Ga-GCUGuGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 25361 0.66 0.926382
Target:  5'- aCGuUCACGAGCgaCaGCGCGACGAa- -3'
miRNA:   3'- aGC-AGUGCUUGgaGcUGUGCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 2971 0.66 0.920364
Target:  5'- aCGUgGcCGGGCUUCGugGCgcgGACAGCu -3'
miRNA:   3'- aGCAgU-GCUUGGAGCugUG---CUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 13356 0.66 0.920364
Target:  5'- aCGgugUACGGGCg-CGGCACGAgCGGCGu -3'
miRNA:   3'- aGCa--GUGCUUGgaGCUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 9567 0.66 0.919746
Target:  5'- aUCGUgGCGAguucguugccgccACCUucagcgccagcCGGCGCGGCAuCGg -3'
miRNA:   3'- -AGCAgUGCU-------------UGGA-----------GCUGUGCUGUuGC- -5'
16990 5' -50.9 NC_004333.2 + 24732 0.66 0.919746
Target:  5'- cCGUCAuCGGucgagaaGCCgcucaCGaACGCGGCGACGa -3'
miRNA:   3'- aGCAGU-GCU-------UGGa----GC-UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 19410 0.66 0.914058
Target:  5'- cCGcCGCGAcCCgcgcggUCGACGCGGCGcucGCGc -3'
miRNA:   3'- aGCaGUGCUuGG------AGCUGUGCUGU---UGC- -5'
16990 5' -50.9 NC_004333.2 + 12067 0.66 0.914058
Target:  5'- cCGUCGCcAACCUugcguacguggcUGGCGCG-CAGCGc -3'
miRNA:   3'- aGCAGUGcUUGGA------------GCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 24932 0.66 0.914058
Target:  5'- -gGUCACGAACa---ACACGACcGCGc -3'
miRNA:   3'- agCAGUGCUUGgagcUGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 15761 0.66 0.914058
Target:  5'- cUCGUCAgCGAGCUgcgcgaGGCGCGGgcCGACa -3'
miRNA:   3'- -AGCAGU-GCUUGGag----CUGUGCU--GUUGc -5'
16990 5' -50.9 NC_004333.2 + 36628 0.66 0.913412
Target:  5'- gCGUCugcgcaacGCGGGCUUCGACAucaagcuCGACAugACGc -3'
miRNA:   3'- aGCAG--------UGCUUGGAGCUGU-------GCUGU--UGC- -5'
16990 5' -50.9 NC_004333.2 + 12106 0.66 0.910137
Target:  5'- gCGUCACGGGCCagcUCGucguaucggacgguaGCGUGACAACc -3'
miRNA:   3'- aGCAGUGCUUGG---AGC---------------UGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 14170 0.66 0.907466
Target:  5'- -aGUCGCGAuCCaaaacaacacaaUCGGCACGuGCGACc -3'
miRNA:   3'- agCAGUGCUuGG------------AGCUGUGC-UGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.