miRNA display CGI


Results 21 - 40 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 36052 0.7 0.714159
Target:  5'- gUUGUCACGcuACCgucCGAUACGACGAg- -3'
miRNA:   3'- -AGCAGUGCu-UGGa--GCUGUGCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 34059 0.69 0.787009
Target:  5'- aCGaUCACGGGCCaCGACGauagcguCGACGGCa -3'
miRNA:   3'- aGC-AGUGCUUGGaGCUGU-------GCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 32365 0.66 0.93211
Target:  5'- aCGUgCGCaGGCgUCGGCGCGAUcgAACGc -3'
miRNA:   3'- aGCA-GUGcUUGgAGCUGUGCUG--UUGC- -5'
16990 5' -50.9 NC_004333.2 + 32179 0.68 0.844894
Target:  5'- cUCGUCGCaGACCUCGuugACcUGAuCAACGa -3'
miRNA:   3'- -AGCAGUGcUUGGAGC---UGuGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 31160 0.7 0.735866
Target:  5'- gCGUgCACGAG--UCGAgCGCGGCGACGg -3'
miRNA:   3'- aGCA-GUGCUUggAGCU-GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 30934 0.66 0.93211
Target:  5'- aUCG-CACGAucacguCCggCGAUACGcCGGCGg -3'
miRNA:   3'- -AGCaGUGCUu-----GGa-GCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 29774 0.69 0.777877
Target:  5'- cCGuUCAUGAGCUggcgcgggUCGuuCGCGACGACGg -3'
miRNA:   3'- aGC-AGUGCUUGG--------AGCu-GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 28233 0.72 0.624895
Target:  5'- gCGUCACGGugACCgUGACGCGcgcGCGGCGc -3'
miRNA:   3'- aGCAGUGCU--UGGaGCUGUGC---UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27855 0.67 0.896328
Target:  5'- aCGUCGCuGAGCUucaccggcccugcguUCGAgUACGGCGGCa -3'
miRNA:   3'- aGCAGUG-CUUGG---------------AGCU-GUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 27840 0.71 0.680993
Target:  5'- -gGUCGCGGuACCcgUCGGCACGGcCGGCa -3'
miRNA:   3'- agCAGUGCU-UGG--AGCUGUGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 27676 0.67 0.893431
Target:  5'- -aGUCGCGcACCUgaACGCGcuGCAGCGa -3'
miRNA:   3'- agCAGUGCuUGGAgcUGUGC--UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27648 0.71 0.669826
Target:  5'- aUGUUACaGGCCgccagcgagCGGCGCGGCGGCGg -3'
miRNA:   3'- aGCAGUGcUUGGa--------GCUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27609 0.69 0.807773
Target:  5'- aCGgCGCG-ACC-CGACGCGcCGACGa -3'
miRNA:   3'- aGCaGUGCuUGGaGCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27405 0.69 0.807773
Target:  5'- cCGUCAUGuuuGCCguaacccuGCGCGGCGACGg -3'
miRNA:   3'- aGCAGUGCu--UGGagc-----UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27287 0.66 0.907466
Target:  5'- gUCGcCACGAGCCggCGAaacCGAUGAUGc -3'
miRNA:   3'- -AGCaGUGCUUGGa-GCUgu-GCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27066 0.68 0.853615
Target:  5'- gCGcUCGCGAACaUCaGAC-CGACGGCGu -3'
miRNA:   3'- aGC-AGUGCUUGgAG-CUGuGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 25781 0.71 0.692113
Target:  5'- gCGcCGCGaAGCCUCGACcUGGCAgACGg -3'
miRNA:   3'- aGCaGUGC-UUGGAGCUGuGCUGU-UGC- -5'
16990 5' -50.9 NC_004333.2 + 25719 0.68 0.853615
Target:  5'- aUGuUCACGAGCCUCGGgcaggucgccauCGCGuuccuCGGCGg -3'
miRNA:   3'- aGC-AGUGCUUGGAGCU------------GUGCu----GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 25674 0.66 0.926382
Target:  5'- cCGUCGCGAACgCggCGACcUGAuCAGCc -3'
miRNA:   3'- aGCAGUGCUUG-Ga-GCUGuGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 25596 0.7 0.757139
Target:  5'- ---aCACGAgcGCCgaugUCGugACGACGGCGg -3'
miRNA:   3'- agcaGUGCU--UGG----AGCugUGCUGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.