miRNA display CGI


Results 21 - 40 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 41904 0.67 0.74996
Target:  5'- cGCGUGAuucUGGCCugAUgGAAcCGGacaGCGa -3'
miRNA:   3'- -CGCACU---GCUGGugUAgCUU-GCCg--UGC- -5'
16991 5' -53.3 NC_004333.2 + 41699 0.79 0.187383
Target:  5'- cGCG-GGCGGCaACuUCGGGCGGCACGg -3'
miRNA:   3'- -CGCaCUGCUGgUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 40226 0.69 0.641341
Target:  5'- cGUaUGGCGACUAC-UCGuccgacggcgacAGCGGCGCGa -3'
miRNA:   3'- -CGcACUGCUGGUGuAGC------------UUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 39737 0.67 0.74996
Target:  5'- aCGUGGUGGCCgggcagaucaACGUCG-GCGGCACc -3'
miRNA:   3'- cGCACUGCUGG----------UGUAGCuUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 39499 0.66 0.804302
Target:  5'- gGCGUaacggacgacacgccGAuCGGCUAUAUCGAcaucgguuGCGGCGCc -3'
miRNA:   3'- -CGCA---------------CU-GCUGGUGUAGCU--------UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 39457 0.69 0.652421
Target:  5'- gGCaaGAUGAUCGCGgacUCGAGCGGCgucACGg -3'
miRNA:   3'- -CGcaCUGCUGGUGU---AGCUUGCCG---UGC- -5'
16991 5' -53.3 NC_004333.2 + 39234 0.75 0.33152
Target:  5'- uGCGUGcaaugcuCGACCGCAcccCGAGCGGC-CGg -3'
miRNA:   3'- -CGCACu------GCUGGUGUa--GCUUGCCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 38830 0.66 0.800439
Target:  5'- aGCuuugGACGACCgacACGUCGGACacguaccgGGCGCc -3'
miRNA:   3'- -CGca--CUGCUGG---UGUAGCUUG--------CCGUGc -5'
16991 5' -53.3 NC_004333.2 + 38464 0.72 0.48846
Target:  5'- gGCGcGACGcgaugauugcgcuGCCGCaAUgGGACGGCACGc -3'
miRNA:   3'- -CGCaCUGC-------------UGGUG-UAgCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 38397 0.69 0.619165
Target:  5'- gGCGUGACGccgGCCACGgUCaaGACGGCGa- -3'
miRNA:   3'- -CGCACUGC---UGGUGU-AGc-UUGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 38253 0.67 0.760346
Target:  5'- uGCGcGGCGACCuGCucguGUgGGACGGuCACGc -3'
miRNA:   3'- -CGCaCUGCUGG-UG----UAgCUUGCC-GUGC- -5'
16991 5' -53.3 NC_004333.2 + 37991 0.7 0.608089
Target:  5'- cGCGUGcGCGACUGCAUCuugucGACGGCu-- -3'
miRNA:   3'- -CGCAC-UGCUGGUGUAGc----UUGCCGugc -5'
16991 5' -53.3 NC_004333.2 + 37701 0.68 0.685506
Target:  5'- cGCGUGGCGGCUcaauggccuGC-UCGAuguCGGCAa- -3'
miRNA:   3'- -CGCACUGCUGG---------UGuAGCUu--GCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 37424 0.75 0.345528
Target:  5'- uGCGcGGCGugCACGUguacugcggcgugaCGAACGGCGCc -3'
miRNA:   3'- -CGCaCUGCugGUGUA--------------GCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 37365 0.68 0.685506
Target:  5'- aCGcGACGugcACCGCGUCGcGCGGC-CGu -3'
miRNA:   3'- cGCaCUGC---UGGUGUAGCuUGCCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 36370 0.72 0.499892
Target:  5'- cGCGcUGAUGGCCGCGUCGuACuuGCGCu -3'
miRNA:   3'- -CGC-ACUGCUGGUGUAGCuUGc-CGUGc -5'
16991 5' -53.3 NC_004333.2 + 36128 0.66 0.837677
Target:  5'- ---cGACGGCCuGCG-CGAcCGGCGCa -3'
miRNA:   3'- cgcaCUGCUGG-UGUaGCUuGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 35493 0.74 0.356523
Target:  5'- -gGUGAgCGuGCCGCcugCGAGCGGCACGu -3'
miRNA:   3'- cgCACU-GC-UGGUGua-GCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 35489 0.67 0.760346
Target:  5'- uCGUGAUGAuCCAguUGUCGcuguuCGGCGCGg -3'
miRNA:   3'- cGCACUGCU-GGU--GUAGCuu---GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 34649 0.72 0.479199
Target:  5'- gGCGgcaacgccGCGAgCACGUCGGACGGCGa- -3'
miRNA:   3'- -CGCac------UGCUgGUGUAGCUUGCCGUgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.