miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 44600 0.66 0.808778
Target:  5'- cCGCGAugUGGCGcacuaugugGUCGGCCgacgCGCUgcGCGGc -3'
miRNA:   3'- -GCGUU--GCCGU---------UAGUUGGa---GCGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 41668 0.66 0.808778
Target:  5'- aCGC--CGGCAAggagaauauccUCGugCUCGaCGCGGg -3'
miRNA:   3'- -GCGuuGCCGUU-----------AGUugGAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 41530 0.66 0.808778
Target:  5'- aGCAAcacCGGCAcaucGUCAGCgUCGCgAUGc -3'
miRNA:   3'- gCGUU---GCCGU----UAGUUGgAGCGgUGCc -5'
16992 3' -53.6 NC_004333.2 + 22554 0.66 0.808778
Target:  5'- aGCGACGaGCGcgCGgugaaacccGCCgUCGUCACGa -3'
miRNA:   3'- gCGUUGC-CGUuaGU---------UGG-AGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 3735 0.66 0.808778
Target:  5'- uGCAcCGGCAGgccgagcGCCUCGCaCGCa- -3'
miRNA:   3'- gCGUuGCCGUUagu----UGGAGCG-GUGcc -5'
16992 3' -53.6 NC_004333.2 + 2194 0.66 0.808778
Target:  5'- gCGCcgagUGGCAGgccgggaCAccacGCCUCGCCGCGa -3'
miRNA:   3'- -GCGuu--GCCGUUa------GU----UGGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 30013 0.66 0.808778
Target:  5'- gGCAcgcCGGCAAUCGGCuucuugCUCGUgGCGu -3'
miRNA:   3'- gCGUu--GCCGUUAGUUG------GAGCGgUGCc -5'
16992 3' -53.6 NC_004333.2 + 977 0.66 0.808778
Target:  5'- cCGUcGCGGCGAcuUguGCCUCuGCUgcGCGGc -3'
miRNA:   3'- -GCGuUGCCGUU--AguUGGAG-CGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 36255 0.66 0.807819
Target:  5'- gCGUAAUGGCGcgCGcgccgcugcgcauGCCggGCCGCGa -3'
miRNA:   3'- -GCGUUGCCGUuaGU-------------UGGagCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 39266 0.66 0.807819
Target:  5'- cCGCGuCGcGCAucgacgcCAACCUCGCCaagaucaaggugcGCGGc -3'
miRNA:   3'- -GCGUuGC-CGUua-----GUUGGAGCGG-------------UGCC- -5'
16992 3' -53.6 NC_004333.2 + 416 0.66 0.804929
Target:  5'- gCGCGGCgaugugcuuGGCAcaGUCGGCCgggguguacgagGCCACGGc -3'
miRNA:   3'- -GCGUUG---------CCGU--UAGUUGGag----------CGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 45839 0.66 0.802994
Target:  5'- gCGCAACGGCcgcacgGugCUCGCauuccgccaguucaaCGCGGg -3'
miRNA:   3'- -GCGUUGCCGuuag--UugGAGCG---------------GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 3927 0.66 0.799101
Target:  5'- aGCGGCGGCAGgcCGACCggcagguuggCGCCGu-- -3'
miRNA:   3'- gCGUUGCCGUUa-GUUGGa---------GCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 32594 0.66 0.799101
Target:  5'- aGCAGCGuGCGAccgugaUCGagcagcuuaaggAgCUCGCCACGa -3'
miRNA:   3'- gCGUUGC-CGUU------AGU------------UgGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 39394 0.66 0.799101
Target:  5'- gCGCAA-GGCAuugccggCGACUUCGCCAg-- -3'
miRNA:   3'- -GCGUUgCCGUua-----GUUGGAGCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 29698 0.66 0.799101
Target:  5'- gGCAACGGCGGguacGCCUCcgguGCCG-GGu -3'
miRNA:   3'- gCGUUGCCGUUagu-UGGAG----CGGUgCC- -5'
16992 3' -53.6 NC_004333.2 + 41933 0.66 0.799101
Target:  5'- gGUAugGGCGAagaaUCGACCcacuaauuUCGCgCACGc -3'
miRNA:   3'- gCGUugCCGUU----AGUUGG--------AGCG-GUGCc -5'
16992 3' -53.6 NC_004333.2 + 21451 0.66 0.799101
Target:  5'- aCGCAAUGG--GUCAaguuccugGCCggCGCgGCGGg -3'
miRNA:   3'- -GCGUUGCCguUAGU--------UGGa-GCGgUGCC- -5'
16992 3' -53.6 NC_004333.2 + 47485 0.66 0.799101
Target:  5'- gGCGGCGGCA--CGAUCgCGCUcaccgagcACGGg -3'
miRNA:   3'- gCGUUGCCGUuaGUUGGaGCGG--------UGCC- -5'
16992 3' -53.6 NC_004333.2 + 39452 0.66 0.798123
Target:  5'- -cCAACGGCAAgaugaucgcggacUCGAgCggCGUCACGGu -3'
miRNA:   3'- gcGUUGCCGUU-------------AGUUgGa-GCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.