miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 39676 0.66 0.458217
Target:  5'- aGGCGGCGcGCuuccUGGUCggccugccuGCGC-CACUGAc -3'
miRNA:   3'- -CCGCCGC-CGu---GCUAG---------CGCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 10550 0.66 0.452472
Target:  5'- -cCGGCGGgAUG-UCGCGCgugacaucaugcagCACCGGc -3'
miRNA:   3'- ccGCCGCCgUGCuAGCGCGa-------------GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 19200 0.66 0.448664
Target:  5'- cGGCGGCcGCGCaacuGAUcgcCGCGUUCgACCGc -3'
miRNA:   3'- -CCGCCGcCGUG----CUA---GCGCGAG-UGGCu -5'
16992 5' -60.4 NC_004333.2 + 15767 0.66 0.448664
Target:  5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3'
miRNA:   3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 21547 0.66 0.448664
Target:  5'- aGCGGCGGUgcgacaACGAUCaaCGC-CGCCa- -3'
miRNA:   3'- cCGCCGCCG------UGCUAGc-GCGaGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 43275 0.66 0.439222
Target:  5'- gGGCGcaaGgGGCGcCGAUCccggccggcuauGCGCUCguGCCGAu -3'
miRNA:   3'- -CCGC---CgCCGU-GCUAG------------CGCGAG--UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 981 0.66 0.433612
Target:  5'- cGCGGCGacuugugccucugcuGCGCGGcagCGCGUUCuuCCGGc -3'
miRNA:   3'- cCGCCGC---------------CGUGCUa--GCGCGAGu-GGCU- -5'
16992 5' -60.4 NC_004333.2 + 12225 0.66 0.429895
Target:  5'- -aCGGCuugaauGCGCaGAUCGCGCUCAUgaCGAc -3'
miRNA:   3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5'
16992 5' -60.4 NC_004333.2 + 47688 0.66 0.429895
Target:  5'- cGGCaaGGCGaaGUACGAcgaagcguUCaCGCUCGCCGGc -3'
miRNA:   3'- -CCG--CCGC--CGUGCU--------AGcGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 25938 0.66 0.42712
Target:  5'- uGCGcGCGGCGCGAUgccggcggccaguaCGCGg-CGCUGGa -3'
miRNA:   3'- cCGC-CGCCGUGCUA--------------GCGCgaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 5044 0.66 0.420685
Target:  5'- aGGCGGcCGGCuguuggcCGAcgUCgGCGCggCGCUGAa -3'
miRNA:   3'- -CCGCC-GCCGu------GCU--AG-CGCGa-GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 2635 0.66 0.420685
Target:  5'- cGC-GCGGUuc-AUCGCGCUUGCCGGc -3'
miRNA:   3'- cCGcCGCCGugcUAGCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 29886 0.66 0.420685
Target:  5'- cGGCGaaGCGcuGCGCGAUCGgGCcgCGCgCGGc -3'
miRNA:   3'- -CCGC--CGC--CGUGCUAGCgCGa-GUG-GCU- -5'
16992 5' -60.4 NC_004333.2 + 27442 0.66 0.420685
Target:  5'- cGGCGaugucCGGCAgCGcgCGCGCcgucaUCACCGc -3'
miRNA:   3'- -CCGCc----GCCGU-GCuaGCGCG-----AGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 41508 0.66 0.420685
Target:  5'- cGGCGGauGCGCGccugcUCGaGCgCGCCGAg -3'
miRNA:   3'- -CCGCCgcCGUGCu----AGCgCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 13365 0.66 0.417946
Target:  5'- gGGC-GCGGCACGAgcggCGUGUccaugaucuggucgUCGCCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUa---GCGCG--------------AGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 24045 0.66 0.411596
Target:  5'- --aGGCGGcCGCGAacaUUGCGCgCugCGAc -3'
miRNA:   3'- ccgCCGCC-GUGCU---AGCGCGaGugGCU- -5'
16992 5' -60.4 NC_004333.2 + 21007 0.66 0.411596
Target:  5'- -uCGGgGGCACgcauggcuGAUCGCGC--GCCGAc -3'
miRNA:   3'- ccGCCgCCGUG--------CUAGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 20044 0.66 0.411596
Target:  5'- cGGCGGCGcgcaGUACGGaaaCGCGCgCGuuGAg -3'
miRNA:   3'- -CCGCCGC----CGUGCUa--GCGCGaGUggCU- -5'
16992 5' -60.4 NC_004333.2 + 38755 0.66 0.411596
Target:  5'- uGGaaGCGGcCACGAgcggcaUCGCcgaGCUUGCCGAa -3'
miRNA:   3'- -CCgcCGCC-GUGCU------AGCG---CGAGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.