miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 21642 0.66 0.598854
Target:  5'- cGGaagGCAUGCUGCGc--GCGCAGaucgGCCa -3'
miRNA:   3'- -CCg--CGUGCGAUGCuccCGCGUUa---CGG- -5'
16993 5' -57.2 NC_004333.2 + 43295 0.66 0.598854
Target:  5'- aGCGCGCGCUACauggucAGcGGCgGCAGcgGCa -3'
miRNA:   3'- cCGCGUGCGAUGc-----UC-CCG-CGUUa-CGg -5'
16993 5' -57.2 NC_004333.2 + 38599 0.66 0.598854
Target:  5'- aGCGC-CaGCUACagccGGGCGCGccgcugcccgugGUGCCc -3'
miRNA:   3'- cCGCGuG-CGAUGcu--CCCGCGU------------UACGG- -5'
16993 5' -57.2 NC_004333.2 + 45569 0.66 0.595584
Target:  5'- cGGUGCucaugGCGCUcgaccagcccggucGCGAGauCGUGAUGCCg -3'
miRNA:   3'- -CCGCG-----UGCGA--------------UGCUCccGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 45166 0.66 0.587963
Target:  5'- -uCGCGCGCUACGucGcGGCGgAcgcGCCg -3'
miRNA:   3'- ccGCGUGCGAUGCu-C-CCGCgUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 40212 0.66 0.587963
Target:  5'- --gGCACGCUguACGAaGuGCGCGAcgcgGCCg -3'
miRNA:   3'- ccgCGUGCGA--UGCUcC-CGCGUUa---CGG- -5'
16993 5' -57.2 NC_004333.2 + 37113 0.66 0.570617
Target:  5'- gGGcCGCACGCccgGCGGucgagaauucgacccGGGCGCGcuugGCg -3'
miRNA:   3'- -CC-GCGUGCGa--UGCU---------------CCCGCGUua--CGg -5'
16993 5' -57.2 NC_004333.2 + 11514 0.66 0.5663
Target:  5'- -aCGagGCGCUGCGAaGGCGUcAUGUCg -3'
miRNA:   3'- ccGCg-UGCGAUGCUcCCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 43384 0.66 0.5663
Target:  5'- aGCGuCACGCgACGcGGGCuCAcccUGCCg -3'
miRNA:   3'- cCGC-GUGCGaUGCuCCCGcGUu--ACGG- -5'
16993 5' -57.2 NC_004333.2 + 31159 0.66 0.5663
Target:  5'- aGCGUgcacgagucgaGCGCgGCGAcGGCGU-AUGCCg -3'
miRNA:   3'- cCGCG-----------UGCGaUGCUcCCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 45503 0.66 0.5663
Target:  5'- cGGCGCgACGCUGCaAGcugccGGCGUugcgGCUg -3'
miRNA:   3'- -CCGCG-UGCGAUGcUC-----CCGCGuua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 38463 0.66 0.555543
Target:  5'- uGGCGCgACGCgAUGAuuGCGC--UGCCg -3'
miRNA:   3'- -CCGCG-UGCGaUGCUccCGCGuuACGG- -5'
16993 5' -57.2 NC_004333.2 + 15767 0.66 0.544847
Target:  5'- aGCGa--GCUGCGcGaGGCGCGG-GCCg -3'
miRNA:   3'- cCGCgugCGAUGCuC-CCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 7403 0.66 0.544847
Target:  5'- cGCGUGC-CUGCGgccAGGucuGCGCGAUGCg -3'
miRNA:   3'- cCGCGUGcGAUGC---UCC---CGCGUUACGg -5'
16993 5' -57.2 NC_004333.2 + 30627 0.66 0.544847
Target:  5'- cGUGCAgCGCUuCGGGGauguGCGCGAUcGCUu -3'
miRNA:   3'- cCGCGU-GCGAuGCUCC----CGCGUUA-CGG- -5'
16993 5' -57.2 NC_004333.2 + 39270 0.66 0.544847
Target:  5'- aGGCGCACGCgcgcGCGAu--CGCAGguugGCUg -3'
miRNA:   3'- -CCGCGUGCGa---UGCUcccGCGUUa---CGG- -5'
16993 5' -57.2 NC_004333.2 + 16533 0.67 0.534218
Target:  5'- gGGC-CGCGa-GCGGuGGCGCAAcUGCCc -3'
miRNA:   3'- -CCGcGUGCgaUGCUcCCGCGUU-ACGG- -5'
16993 5' -57.2 NC_004333.2 + 31115 0.67 0.534218
Target:  5'- cGGCGCGaguUGCUGCucGcGCGCGA-GCCc -3'
miRNA:   3'- -CCGCGU---GCGAUGcuCcCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 44422 0.67 0.533159
Target:  5'- gGGCucGCugGCUggugcguGCGA-GGCGCucgGCCu -3'
miRNA:   3'- -CCG--CGugCGA-------UGCUcCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 41617 0.67 0.523664
Target:  5'- cGCGCuCGCUcgugcucugGCGGcagauugucGGGCGCGGgcugcgGCCg -3'
miRNA:   3'- cCGCGuGCGA---------UGCU---------CCCGCGUUa-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.