miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 32879 0.66 0.529365
Target:  5'- gGCaAGCGCc--CGGuGCUgaugcugaccGCGCCGCCg -3'
miRNA:   3'- gCG-UCGCGuaaGUCcCGA----------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 23522 0.66 0.529365
Target:  5'- aGCAccGCGCcUUUcGGGUa--GCCGCCg -3'
miRNA:   3'- gCGU--CGCGuAAGuCCCGaugCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 25403 0.66 0.528312
Target:  5'- uGCGGCGCAUcgaacgCAGucCUgaauacgACGUCGCCg -3'
miRNA:   3'- gCGUCGCGUAa-----GUCccGA-------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 38373 0.66 0.518869
Target:  5'- gCGCuGuCGCGUgUCGGGuGCgccggcgugACGCCgGCCa -3'
miRNA:   3'- -GCGuC-GCGUA-AGUCC-CGa--------UGCGG-CGG- -5'
16996 5' -58.3 NC_004333.2 + 27260 0.66 0.518869
Target:  5'- aCGCcuCGUAUUCGGacuGGCUGaacgGUCGCCa -3'
miRNA:   3'- -GCGucGCGUAAGUC---CCGAUg---CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 45745 0.66 0.518869
Target:  5'- uCGCcGCGCcgUacCAaGGC-ACGCUGCCg -3'
miRNA:   3'- -GCGuCGCGuaA--GUcCCGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 38541 0.66 0.518869
Target:  5'- aGCcgGGCGCA-----GGC-GCGCCGCCg -3'
miRNA:   3'- gCG--UCGCGUaagucCCGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 27636 0.66 0.508456
Target:  5'- aGCGGCGCGgcCAu-GUUACagGCCGCCa -3'
miRNA:   3'- gCGUCGCGUaaGUccCGAUG--CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 17746 0.66 0.508456
Target:  5'- aCGUGGCGCGaggCAGucGCUACGgCGCg -3'
miRNA:   3'- -GCGUCGCGUaa-GUCc-CGAUGCgGCGg -5'
16996 5' -58.3 NC_004333.2 + 38436 0.66 0.508456
Target:  5'- gGC-GCGCAUcCGGcGCUcAUGUCGCCg -3'
miRNA:   3'- gCGuCGCGUAaGUCcCGA-UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 15435 0.66 0.508456
Target:  5'- gGCAGCGaccugcgcgugaCGUUCugcucgccGGCUAuCGCUGCCg -3'
miRNA:   3'- gCGUCGC------------GUAAGuc------CCGAU-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 29893 0.66 0.508456
Target:  5'- gCGCuGCGCGaUC-GGGCcGCGCgCGgCa -3'
miRNA:   3'- -GCGuCGCGUaAGuCCCGaUGCG-GCgG- -5'
16996 5' -58.3 NC_004333.2 + 6472 0.66 0.508456
Target:  5'- aGCAgGCGCA-UCAGGuCUAggcaGUCGCCc -3'
miRNA:   3'- gCGU-CGCGUaAGUCCcGAUg---CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 44392 0.66 0.502251
Target:  5'- gGCGGCGCGUgcgCGguacaacggccugccGGGCU-CGCUGgCu -3'
miRNA:   3'- gCGUCGCGUAa--GU---------------CCCGAuGCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 35874 0.66 0.498133
Target:  5'- gGCuGGCGCg--CAGGacgccgcaauGC-GCGCCGCCg -3'
miRNA:   3'- gCG-UCGCGuaaGUCC----------CGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 24978 0.66 0.498133
Target:  5'- uCGCgAGCGCAacgUCu--GCguccGCGCCGCCu -3'
miRNA:   3'- -GCG-UCGCGUa--AGuccCGa---UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 21858 0.66 0.498133
Target:  5'- aCGCGGCGCGcgCuacaagcuGGuucGCUGCGCauaGCCc -3'
miRNA:   3'- -GCGUCGCGUaaGu-------CC---CGAUGCGg--CGG- -5'
16996 5' -58.3 NC_004333.2 + 38035 0.66 0.487904
Target:  5'- uCGCGGuCGCGaagUGGucGGCUAUGCCGaCCu -3'
miRNA:   3'- -GCGUC-GCGUaa-GUC--CCGAUGCGGC-GG- -5'
16996 5' -58.3 NC_004333.2 + 47886 0.66 0.486887
Target:  5'- gGCAGCcuucGCAUUCgcacggcGGGGCUcuacuACGUgGCUg -3'
miRNA:   3'- gCGUCG----CGUAAG-------UCCCGA-----UGCGgCGG- -5'
16996 5' -58.3 NC_004333.2 + 20473 0.66 0.477776
Target:  5'- aCGCAGCcgguuaGCGUccCGGcGGCUGCcgcgcaaccGCUGCCg -3'
miRNA:   3'- -GCGUCG------CGUAa-GUC-CCGAUG---------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.