miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 5' -58.5 NC_004333.2 + 32828 0.66 0.546592
Target:  5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3'
miRNA:   3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 9948 0.66 0.542389
Target:  5'- -cGAACGGCGCgGcgcGCUUGCuCGacUCGGg -3'
miRNA:   3'- guCUUGCCGCGgU---UGGACG-GCc-AGCC- -5'
17003 5' -58.5 NC_004333.2 + 44971 0.66 0.53193
Target:  5'- -cGGGCGGCGC--GCCggGCCGGcucacCGGc -3'
miRNA:   3'- guCUUGCCGCGguUGGa-CGGCCa----GCC- -5'
17003 5' -58.5 NC_004333.2 + 39954 0.66 0.53193
Target:  5'- gCGGGcCGGCGUCAuCCUGCCGcGcagCGu -3'
miRNA:   3'- -GUCUuGCCGCGGUuGGACGGC-Ca--GCc -5'
17003 5' -58.5 NC_004333.2 + 17881 0.66 0.53193
Target:  5'- gCAGGcgcgACGGCgGCCAGCUcGCC-GUCGa -3'
miRNA:   3'- -GUCU----UGCCG-CGGUUGGaCGGcCAGCc -5'
17003 5' -58.5 NC_004333.2 + 17758 0.66 0.530889
Target:  5'- gCAGucgcuACGGCGCgCGAauucgguCCggcGCCGGUCGc -3'
miRNA:   3'- -GUCu----UGCCGCG-GUU-------GGa--CGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 37106 0.66 0.521545
Target:  5'- cCGGAAUGG-GCCGcacGCCcGgCGGUCGa -3'
miRNA:   3'- -GUCUUGCCgCGGU---UGGaCgGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 9387 0.66 0.521545
Target:  5'- ---cGCGGCGCC--CCaUGCCGGacauuUCGGc -3'
miRNA:   3'- gucuUGCCGCGGuuGG-ACGGCC-----AGCC- -5'
17003 5' -58.5 NC_004333.2 + 10503 0.66 0.521545
Target:  5'- -----gGGCcgGCCGACgaGCgGGUCGGg -3'
miRNA:   3'- gucuugCCG--CGGUUGgaCGgCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 1642 0.66 0.521545
Target:  5'- --cGGCGGCGUagcccugaauGCgCUGCgCGGUCGGa -3'
miRNA:   3'- gucUUGCCGCGgu--------UG-GACG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 23151 0.66 0.521545
Target:  5'- -cGAuguUGGUGCCAucGCCcgucacGUCGGUCGGu -3'
miRNA:   3'- guCUu--GCCGCGGU--UGGa-----CGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 29855 0.66 0.515352
Target:  5'- uGGAACGGCGUgAggaucgugcgcacgcGCgUGCCGG-CGa -3'
miRNA:   3'- gUCUUGCCGCGgU---------------UGgACGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 27281 0.66 0.50102
Target:  5'- -uGAACGGuCGCC-ACgaGCCGG-CGa -3'
miRNA:   3'- guCUUGCC-GCGGuUGgaCGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 30500 0.66 0.50102
Target:  5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3'
miRNA:   3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5'
17003 5' -58.5 NC_004333.2 + 28759 0.67 0.490891
Target:  5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3'
miRNA:   3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5'
17003 5' -58.5 NC_004333.2 + 25408 0.67 0.490891
Target:  5'- -cGAGC-GCGCCugcAGCgUGCCGG-CGGc -3'
miRNA:   3'- guCUUGcCGCGG---UUGgACGGCCaGCC- -5'
17003 5' -58.5 NC_004333.2 + 45568 0.67 0.480859
Target:  5'- uCGGugcucAUGGCGCuCGACCaGCCcGGUCGc -3'
miRNA:   3'- -GUCu----UGCCGCG-GUUGGaCGG-CCAGCc -5'
17003 5' -58.5 NC_004333.2 + 18176 0.67 0.480859
Target:  5'- -cGAGCGGCGCCGcauggugcucgcGCUcggcGCCGGU-GGc -3'
miRNA:   3'- guCUUGCCGCGGU------------UGGa---CGGCCAgCC- -5'
17003 5' -58.5 NC_004333.2 + 4882 0.67 0.441779
Target:  5'- uCGGcACGaGCGCaUAGCCgGCCGGgaUCGGc -3'
miRNA:   3'- -GUCuUGC-CGCG-GUUGGaCGGCC--AGCC- -5'
17003 5' -58.5 NC_004333.2 + 8648 0.67 0.441779
Target:  5'- uCGGcGCGGCGcCCGGCUUGCuCGugacggugccGUCGGc -3'
miRNA:   3'- -GUCuUGCCGC-GGUUGGACG-GC----------CAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.