miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 5' -58.5 NC_004333.2 + 29855 0.66 0.515352
Target:  5'- uGGAACGGCGUgAggaucgugcgcacgcGCgUGCCGG-CGa -3'
miRNA:   3'- gUCUUGCCGCGgU---------------UGgACGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 28907 0.69 0.336359
Target:  5'- gCAGGcCGGCGCauACUUGCC-GUCGGu -3'
miRNA:   3'- -GUCUuGCCGCGguUGGACGGcCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 28759 0.67 0.490891
Target:  5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3'
miRNA:   3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5'
17003 5' -58.5 NC_004333.2 + 27665 0.68 0.39557
Target:  5'- -cGAGCGGCGCggCGGCg-GCCGGcagCGGu -3'
miRNA:   3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5'
17003 5' -58.5 NC_004333.2 + 27281 0.66 0.50102
Target:  5'- -uGAACGGuCGCC-ACgaGCCGG-CGa -3'
miRNA:   3'- guCUUGCC-GCGGuUGgaCGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 25714 0.8 0.06621
Target:  5'- gAGAAUGGCuugcucgccgGCCAGCUgcagGCCGGUCGGc -3'
miRNA:   3'- gUCUUGCCG----------CGGUUGGa---CGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 25408 0.67 0.490891
Target:  5'- -cGAGC-GCGCCugcAGCgUGCCGG-CGGc -3'
miRNA:   3'- guCUUGcCGCGG---UUGgACGGCCaGCC- -5'
17003 5' -58.5 NC_004333.2 + 23661 0.74 0.183555
Target:  5'- gCGGAACGcCGCCGGCCU-CCGG-CGGc -3'
miRNA:   3'- -GUCUUGCcGCGGUUGGAcGGCCaGCC- -5'
17003 5' -58.5 NC_004333.2 + 23151 0.66 0.521545
Target:  5'- -cGAuguUGGUGCCAucGCCcgucacGUCGGUCGGu -3'
miRNA:   3'- guCUu--GCCGCGGU--UGGa-----CGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 20445 0.72 0.214804
Target:  5'- --cGGCGGCGCgaAGCCUgcGCCGGUCGu -3'
miRNA:   3'- gucUUGCCGCGg-UUGGA--CGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 19549 0.75 0.140359
Target:  5'- -uGAugGGCGCCggUC-GCaCGGUCGGc -3'
miRNA:   3'- guCUugCCGCGGuuGGaCG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 18176 0.67 0.480859
Target:  5'- -cGAGCGGCGCCGcauggugcucgcGCUcggcGCCGGU-GGc -3'
miRNA:   3'- guCUUGCCGCGGU------------UGGa---CGGCCAgCC- -5'
17003 5' -58.5 NC_004333.2 + 17881 0.66 0.53193
Target:  5'- gCAGGcgcgACGGCgGCCAGCUcGCC-GUCGa -3'
miRNA:   3'- -GUCU----UGCCG-CGGUUGGaCGGcCAGCc -5'
17003 5' -58.5 NC_004333.2 + 17758 0.66 0.530889
Target:  5'- gCAGucgcuACGGCGCgCGAauucgguCCggcGCCGGUCGc -3'
miRNA:   3'- -GUCu----UGCCGCG-GUU-------GGa--CGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 17658 0.7 0.320673
Target:  5'- gGGAugGGacaaGCUGGCCggcaGCCuGGUCGGc -3'
miRNA:   3'- gUCUugCCg---CGGUUGGa---CGG-CCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 11832 0.7 0.327663
Target:  5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3'
miRNA:   3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 10503 0.66 0.521545
Target:  5'- -----gGGCcgGCCGACgaGCgGGUCGGg -3'
miRNA:   3'- gucuugCCG--CGGUUGgaCGgCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 10016 0.7 0.328447
Target:  5'- -cGAGCGGCguGCCAagAUCggcgGCCGgGUCGGc -3'
miRNA:   3'- guCUUGCCG--CGGU--UGGa---CGGC-CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 9948 0.66 0.542389
Target:  5'- -cGAACGGCGCgGcgcGCUUGCuCGacUCGGg -3'
miRNA:   3'- guCUUGCCGCGgU---UGGACG-GCc-AGCC- -5'
17003 5' -58.5 NC_004333.2 + 9387 0.66 0.521545
Target:  5'- ---cGCGGCGCC--CCaUGCCGGacauuUCGGc -3'
miRNA:   3'- gucuUGCCGCGGuuGG-ACGGCC-----AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.