miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 3' -56.9 NC_004333.2 + 45554 0.66 0.624525
Target:  5'- gAUGAACc-GCGCGGUcgGUCUgUCGCGCa -3'
miRNA:   3'- -UGCUUGcaCGCGCCG--UAGG-AGUGCGg -5'
17004 3' -56.9 NC_004333.2 + 4906 0.66 0.624525
Target:  5'- uGCGAuaGUGCGCcGUcgCCauccaaaacaUCGCGCCg -3'
miRNA:   3'- -UGCUugCACGCGcCGuaGG----------AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 46185 0.66 0.624525
Target:  5'- gGCGAcCGaGgGCugGGCGcgUCUCGCGCCg -3'
miRNA:   3'- -UGCUuGCaCgCG--CCGUa-GGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 14386 0.66 0.617967
Target:  5'- uCGGcaauuGCcUGCGCGGUcgCCaugaaggcgaguuucUCGCGCCg -3'
miRNA:   3'- uGCU-----UGcACGCGCCGuaGG---------------AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 14067 0.66 0.617967
Target:  5'- gAUGGGgGUGCGCaGGCAaagCUgaugcagcgcgaucgUCAUGCCg -3'
miRNA:   3'- -UGCUUgCACGCG-CCGUa--GG---------------AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 32359 0.66 0.613598
Target:  5'- cCGAuaGCGUGCGCaGCAcgacguUCa--GCGCCg -3'
miRNA:   3'- uGCU--UGCACGCGcCGU------AGgagUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 429 0.66 0.612505
Target:  5'- gACaGGC-UGCGCGGCAgugcggaacgcaaUCUUCACGgCg -3'
miRNA:   3'- -UGcUUGcACGCGCCGU-------------AGGAGUGCgG- -5'
17004 3' -56.9 NC_004333.2 + 8677 0.66 0.602686
Target:  5'- cCGAuCG-GCGUGuCGUCCgUUACGCCg -3'
miRNA:   3'- uGCUuGCaCGCGCcGUAGG-AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 35853 0.66 0.602686
Target:  5'- uGCGAACGUcaacccGCGCGaggcuggcgcGCAggacgCCgcaaugCGCGCCg -3'
miRNA:   3'- -UGCUUGCA------CGCGC----------CGUa----GGa-----GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 4735 0.66 0.602686
Target:  5'- aGCGcGCGaUGCGC-GCGUCCgUCA-GCCc -3'
miRNA:   3'- -UGCuUGC-ACGCGcCGUAGG-AGUgCGG- -5'
17004 3' -56.9 NC_004333.2 + 8395 0.66 0.591799
Target:  5'- cGCGAGCG-GCGuCGGUcggaucGUCCacugCAgGCCc -3'
miRNA:   3'- -UGCUUGCaCGC-GCCG------UAGGa---GUgCGG- -5'
17004 3' -56.9 NC_004333.2 + 46112 0.66 0.580946
Target:  5'- cCGAGCGcggUGCGCgcuacGGCAaguUCgaggaUCACGCCg -3'
miRNA:   3'- uGCUUGC---ACGCG-----CCGU---AGg----AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 19934 0.66 0.580946
Target:  5'- -gGAGCGccGCGCGcGCGUCacggUCACGUg -3'
miRNA:   3'- ugCUUGCa-CGCGC-CGUAGg---AGUGCGg -5'
17004 3' -56.9 NC_004333.2 + 13901 0.66 0.577698
Target:  5'- cACGGGC-UGCGCGGCGgcugCCguggCGaucguggccgcugcCGCCa -3'
miRNA:   3'- -UGCUUGcACGCGCCGUa---GGa---GU--------------GCGG- -5'
17004 3' -56.9 NC_004333.2 + 39480 0.66 0.570135
Target:  5'- gGCGAagAUGgaagcGCGCGGCGUaacggaCgaCACGCCg -3'
miRNA:   3'- -UGCU--UGCa----CGCGCCGUA------GgaGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 43220 0.66 0.570135
Target:  5'- uACGAAccucgugcCGUGCGUucGCAUgCC-CGCGCCg -3'
miRNA:   3'- -UGCUU--------GCACGCGc-CGUA-GGaGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 31235 0.66 0.570135
Target:  5'- cGCG-ACGgccGCGCGGCG-Ca--GCGCCg -3'
miRNA:   3'- -UGCuUGCa--CGCGCCGUaGgagUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 28435 0.66 0.570135
Target:  5'- cGCGucguuGACG-GCaGCGGCgccGUCUUgCACGCCa -3'
miRNA:   3'- -UGC-----UUGCaCG-CGCCG---UAGGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 21139 0.66 0.569057
Target:  5'- aACGAGCGcGCGCaacuugacgugauGGUgcgCUUCGCGCUg -3'
miRNA:   3'- -UGCUUGCaCGCG-------------CCGua-GGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 10883 0.67 0.559374
Target:  5'- -aGAACGccgGCGCGacaGUCaCUUGCGCCg -3'
miRNA:   3'- ugCUUGCa--CGCGCcg-UAG-GAGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.