miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 10167 0.66 0.753418
Target:  5'- cGgGUcggCGCacuGGAaGCCGAgCGACGCggGCa -3'
miRNA:   3'- -CgCAa--GCG---UCUaCGGCU-GCUGCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 18209 0.66 0.753418
Target:  5'- cGCGgcaUCGCaauacgcgccGGAaaucuacgacGCCGACGgcACGCUGCu -3'
miRNA:   3'- -CGCa--AGCG----------UCUa---------CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 9181 0.66 0.753418
Target:  5'- uGCGUUCguucgcgacgGCAG-UGUCGAUcGCGgUGCg -3'
miRNA:   3'- -CGCAAG----------CGUCuACGGCUGcUGCgACG- -5'
17005 5' -54.6 NC_004333.2 + 14823 0.66 0.753418
Target:  5'- cGCGagcaggucaUUCGCAGAccacggcgUGCCGAucagaaugacgcCGGagaGCUGCu -3'
miRNA:   3'- -CGC---------AAGCGUCU--------ACGGCU------------GCUg--CGACG- -5'
17005 5' -54.6 NC_004333.2 + 40848 0.66 0.753418
Target:  5'- gGCGcgCGCcuucuGGUcGCCGGCGAUGgUcGCg -3'
miRNA:   3'- -CGCaaGCGu----CUA-CGGCUGCUGCgA-CG- -5'
17005 5' -54.6 NC_004333.2 + 26952 0.66 0.752378
Target:  5'- cCGUUC-CAGAUGCgcgCGACGGcCGCccauugaUGCg -3'
miRNA:   3'- cGCAAGcGUCUACG---GCUGCU-GCG-------ACG- -5'
17005 5' -54.6 NC_004333.2 + 47449 0.66 0.752378
Target:  5'- cCGUUCGaCGcAUcgacuagcaacgcGCCGGCGGCGaCUGCc -3'
miRNA:   3'- cGCAAGC-GUcUA-------------CGGCUGCUGC-GACG- -5'
17005 5' -54.6 NC_004333.2 + 31230 0.66 0.742965
Target:  5'- cCGgUCGCGacgGCCGcGCGGCGCaGCg -3'
miRNA:   3'- cGCaAGCGUcuaCGGC-UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 15499 0.66 0.742965
Target:  5'- gGCuGcUCGCGGcgGucaCCGGCGGCGCgucaaGCg -3'
miRNA:   3'- -CG-CaAGCGUCuaC---GGCUGCUGCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 8417 0.66 0.742965
Target:  5'- aCG-UCGCcgauacGGUGCCGcCGACGUUGa -3'
miRNA:   3'- cGCaAGCGu-----CUACGGCuGCUGCGACg -5'
17005 5' -54.6 NC_004333.2 + 46241 0.66 0.742965
Target:  5'- cGCG-UCGCcGGUGCgGGCcagcuggugcaGACGCgugGCu -3'
miRNA:   3'- -CGCaAGCGuCUACGgCUG-----------CUGCGa--CG- -5'
17005 5' -54.6 NC_004333.2 + 34080 0.66 0.732399
Target:  5'- aGCG-UCGaCGGcAUGaCGAUcGCGCUGCa -3'
miRNA:   3'- -CGCaAGC-GUC-UACgGCUGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 32569 0.66 0.732399
Target:  5'- aCGUUCGCcGAaaccgUGaCCGACGAgcaGCgUGCg -3'
miRNA:   3'- cGCAAGCGuCU-----AC-GGCUGCUg--CG-ACG- -5'
17005 5' -54.6 NC_004333.2 + 42291 0.66 0.732399
Target:  5'- cCGgcCGCaAGGUGCCGAcCGAgGCguaucGCg -3'
miRNA:   3'- cGCaaGCG-UCUACGGCU-GCUgCGa----CG- -5'
17005 5' -54.6 NC_004333.2 + 29953 0.66 0.732399
Target:  5'- cGCGaaaaGCGcGUGCCGAgCGcggccGCGCUGCc -3'
miRNA:   3'- -CGCaag-CGUcUACGGCU-GC-----UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 23183 0.66 0.72173
Target:  5'- aGCGUgacaggcggCGCGGAcGCaGACGuuGCGCUcGCg -3'
miRNA:   3'- -CGCAa--------GCGUCUaCGgCUGC--UGCGA-CG- -5'
17005 5' -54.6 NC_004333.2 + 11892 0.66 0.72173
Target:  5'- cGCGUaUCGCAuGgcGCagGACGucgcguguCGCUGCa -3'
miRNA:   3'- -CGCA-AGCGU-CuaCGg-CUGCu-------GCGACG- -5'
17005 5' -54.6 NC_004333.2 + 2866 0.66 0.72173
Target:  5'- gGCGUUCGC-GAa--CGACGuCGCaGCg -3'
miRNA:   3'- -CGCAAGCGuCUacgGCUGCuGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 13134 0.66 0.720658
Target:  5'- uGCGUcaUGCuGAUGCCGGCGAacgaauaCGUcgGCu -3'
miRNA:   3'- -CGCAa-GCGuCUACGGCUGCU-------GCGa-CG- -5'
17005 5' -54.6 NC_004333.2 + 29973 0.66 0.710972
Target:  5'- cGCGUaUUGC-GAUGCCGcgcgcACGACGagcGCa -3'
miRNA:   3'- -CGCA-AGCGuCUACGGC-----UGCUGCga-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.