miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17005 5' -54.6 NC_004333.2 + 34285 0.67 0.656233
Target:  5'- cGCcg-CGCAGcccGUGCCGgccgacuucgcGCGGCGCgGCg -3'
miRNA:   3'- -CGcaaGCGUC---UACGGC-----------UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 34080 0.66 0.732399
Target:  5'- aGCG-UCGaCGGcAUGaCGAUcGCGCUGCa -3'
miRNA:   3'- -CGCaAGC-GUC-UACgGCUGcUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 33386 0.68 0.611963
Target:  5'- cCGaUCGCGuagaacggcGAUGCCuGCGGCGCaGCg -3'
miRNA:   3'- cGCaAGCGU---------CUACGGcUGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 33258 0.71 0.411107
Target:  5'- uGCGUUCGuCGGAUgauugucaaguucaGCCGAgCGcgcGCGUUGCg -3'
miRNA:   3'- -CGCAAGC-GUCUA--------------CGGCU-GC---UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 32883 0.67 0.700135
Target:  5'- aGCGcccggUGCuGAUGCUGACcGCGCcGCc -3'
miRNA:   3'- -CGCaa---GCGuCUACGGCUGcUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 32569 0.66 0.732399
Target:  5'- aCGUUCGCcGAaaccgUGaCCGACGAgcaGCgUGCg -3'
miRNA:   3'- cGCAAGCGuCU-----AC-GGCUGCUg--CG-ACG- -5'
17005 5' -54.6 NC_004333.2 + 32527 0.7 0.514215
Target:  5'- aGCGUUUGCcGAcGUCGcGCGGCGCgcucGCg -3'
miRNA:   3'- -CGCAAGCGuCUaCGGC-UGCUGCGa---CG- -5'
17005 5' -54.6 NC_004333.2 + 31265 0.67 0.655127
Target:  5'- gGUGUUCGuCAGugcaagcaccAUGCCGGCGAgaccggcCGCaccUGCg -3'
miRNA:   3'- -CGCAAGC-GUC----------UACGGCUGCU-------GCG---ACG- -5'
17005 5' -54.6 NC_004333.2 + 31230 0.66 0.742965
Target:  5'- cCGgUCGCGacgGCCGcGCGGCGCaGCg -3'
miRNA:   3'- cGCaAGCGUcuaCGGC-UGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 31005 0.67 0.700135
Target:  5'- gGgGcUCGCAGcgGCCuuguCGACGC-GCa -3'
miRNA:   3'- -CgCaAGCGUCuaCGGcu--GCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 30843 0.7 0.509999
Target:  5'- uGCGUgCGCuauacagcgcgaucAGAucauccucgggcaUGUCGAgGACGCUGCg -3'
miRNA:   3'- -CGCAaGCG--------------UCU-------------ACGGCUgCUGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 30707 0.72 0.395343
Target:  5'- aGCGUgagCGCGGcgGCCuuCG-CGUUGCg -3'
miRNA:   3'- -CGCAa--GCGUCuaCGGcuGCuGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 30682 0.68 0.634102
Target:  5'- cCGUUCGCGccGccGCCGGCGGCG--GCa -3'
miRNA:   3'- cGCAAGCGU--CuaCGGCUGCUGCgaCG- -5'
17005 5' -54.6 NC_004333.2 + 30634 0.67 0.667269
Target:  5'- aGCag-CGCGGcaagGCgCGGCGuGCGCUGCu -3'
miRNA:   3'- -CGcaaGCGUCua--CG-GCUGC-UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 30042 0.71 0.462649
Target:  5'- gGCGUUCGUcuuGAUGCCGugcuCGAaGUUGUu -3'
miRNA:   3'- -CGCAAGCGu--CUACGGCu---GCUgCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29973 0.66 0.710972
Target:  5'- cGCGUaUUGC-GAUGCCGcgcgcACGACGagcGCa -3'
miRNA:   3'- -CGCA-AGCGuCUACGGC-----UGCUGCga-CG- -5'
17005 5' -54.6 NC_004333.2 + 29953 0.66 0.732399
Target:  5'- cGCGaaaaGCGcGUGCCGAgCGcggccGCGCUGCc -3'
miRNA:   3'- -CGCaag-CGUcUACGGCU-GC-----UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29933 0.67 0.689232
Target:  5'- uGCGgauuaGCAGcGUGCCGuCGGCGUcGUa -3'
miRNA:   3'- -CGCaag--CGUC-UACGGCuGCUGCGaCG- -5'
17005 5' -54.6 NC_004333.2 + 29868 0.75 0.260351
Target:  5'- aGCGcgCGCGGuagucGUCGGCGaaGCGCUGCg -3'
miRNA:   3'- -CGCaaGCGUCua---CGGCUGC--UGCGACG- -5'
17005 5' -54.6 NC_004333.2 + 29746 0.74 0.308555
Target:  5'- cGCGcUCGCGG-UGUCGACGccgccgaucgcgagGCGUUGCg -3'
miRNA:   3'- -CGCaAGCGUCuACGGCUGC--------------UGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.