miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 5' -58.9 NC_004333.2 + 32255 0.66 0.484177
Target:  5'- uGGCaGCaGCGGCCgaaaGCCuuccggauGGCGCGg -3'
miRNA:   3'- gCCGaCG-CGUCGGaaagUGG--------UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 26387 0.66 0.484177
Target:  5'- uCGGUcGUGaUAGCgCUUggCugCAGCGCGg -3'
miRNA:   3'- -GCCGaCGC-GUCG-GAAa-GugGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 45044 0.66 0.474072
Target:  5'- gCGGC-GCGCAaacGCUgaaCACC-GCGCGg -3'
miRNA:   3'- -GCCGaCGCGU---CGGaaaGUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 31601 0.66 0.474072
Target:  5'- aCGaGUUGUccgGCAuGCCUUUCGaCAGCGUGa -3'
miRNA:   3'- -GC-CGACG---CGU-CGGAAAGUgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 5543 0.66 0.464074
Target:  5'- uGGCcgGCGaCGGCUUggCGCgAGUGCa -3'
miRNA:   3'- gCCGa-CGC-GUCGGAaaGUGgUCGCGc -5'
17008 5' -58.9 NC_004333.2 + 43635 0.66 0.464074
Target:  5'- aCGGCccgUGCGUccGGCCUgcacCACCAGgauCGCa -3'
miRNA:   3'- -GCCG---ACGCG--UCGGAaa--GUGGUC---GCGc -5'
17008 5' -58.9 NC_004333.2 + 20581 0.66 0.464074
Target:  5'- gGGUcGCGCcguGGUgUUUCugCAGgCGCGg -3'
miRNA:   3'- gCCGaCGCG---UCGgAAAGugGUC-GCGC- -5'
17008 5' -58.9 NC_004333.2 + 17747 0.66 0.464074
Target:  5'- aGGUggUGCGCaagcauucAGCCgg-CGCC-GCGCGg -3'
miRNA:   3'- gCCG--ACGCG--------UCGGaaaGUGGuCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 5165 0.66 0.455171
Target:  5'- uCGaGCaGCGCAGCUUgcgccugauugaacaUCGCCugcaGGCGCGg -3'
miRNA:   3'- -GC-CGaCGCGUCGGAa--------------AGUGG----UCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 14239 0.66 0.454187
Target:  5'- aCGGCgUGCGCGcgcGCCUcuUUCgaGCCgAGCgGCGg -3'
miRNA:   3'- -GCCG-ACGCGU---CGGA--AAG--UGG-UCG-CGC- -5'
17008 5' -58.9 NC_004333.2 + 7848 0.66 0.454187
Target:  5'- gCGGcCUGCGcCGGCCaUUUCcaGCUcGCGCu -3'
miRNA:   3'- -GCC-GACGC-GUCGG-AAAG--UGGuCGCGc -5'
17008 5' -58.9 NC_004333.2 + 11344 0.66 0.454187
Target:  5'- aGGCgGCGCGGUUcgucgUCACCuugccGCGCu -3'
miRNA:   3'- gCCGaCGCGUCGGaa---AGUGGu----CGCGc -5'
17008 5' -58.9 NC_004333.2 + 24526 0.66 0.454187
Target:  5'- cCGGCgGCGUuccGCCUcaaggcgaggacUUCAaCGGCGCGu -3'
miRNA:   3'- -GCCGaCGCGu--CGGA------------AAGUgGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 34218 0.66 0.454187
Target:  5'- cCGGCcGC-CGGCCUgaagUCGCCAagGCGg -3'
miRNA:   3'- -GCCGaCGcGUCGGAa---AGUGGUcgCGC- -5'
17008 5' -58.9 NC_004333.2 + 32295 0.66 0.444416
Target:  5'- gCGGCgaugucgacgUGCGuCAGCaggucggUCACgAGCGCGu -3'
miRNA:   3'- -GCCG----------ACGC-GUCGgaa----AGUGgUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 8780 0.66 0.444416
Target:  5'- uGGCgaaGuCGCcggcaauGCCUUgCGCCGGCGUGa -3'
miRNA:   3'- gCCGa--C-GCGu------CGGAAaGUGGUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 17386 0.66 0.434763
Target:  5'- uCGaGCaGCGCaucgAGCUgcUCGCgCAGCGCGg -3'
miRNA:   3'- -GC-CGaCGCG----UCGGaaAGUG-GUCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 44974 0.66 0.434763
Target:  5'- gCGGC-GCGCcgGGCCggcUCACCGGCc-- -3'
miRNA:   3'- -GCCGaCGCG--UCGGaa-AGUGGUCGcgc -5'
17008 5' -58.9 NC_004333.2 + 8932 0.67 0.425234
Target:  5'- gCGGCUucguucgcgccgGCGCuGUCcaUCGCguGCGCGg -3'
miRNA:   3'- -GCCGA------------CGCGuCGGaaAGUGguCGCGC- -5'
17008 5' -58.9 NC_004333.2 + 31075 0.67 0.415829
Target:  5'- uCGGCUGacagguagaccuUGUGGCCcggUUCGCCgauguuccGGCGCGg -3'
miRNA:   3'- -GCCGAC------------GCGUCGGa--AAGUGG--------UCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.