miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 5' -61.8 NC_004333.2 + 17868 0.66 0.376484
Target:  5'- gGCGgGUGGuGUCgcagGCgCGaCGGCgGCCa -3'
miRNA:   3'- aCGCgUACC-CAGa---CG-GCgGCUGgCGG- -5'
17010 5' -61.8 NC_004333.2 + 2271 0.66 0.376484
Target:  5'- aGCGCAgcgcGUUUGCCGUCGGCaaGUCg -3'
miRNA:   3'- aCGCGUacc-CAGACGGCGGCUGg-CGG- -5'
17010 5' -61.8 NC_004333.2 + 32331 0.66 0.376484
Target:  5'- aGCGCGUGcacGG-CUGCCggGUCG-CUGCCc -3'
miRNA:   3'- aCGCGUAC---CCaGACGG--CGGCuGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 33361 0.66 0.376484
Target:  5'- cGCGCcgucGUGGaacGcCUGCUGCCcGAUCGCg -3'
miRNA:   3'- aCGCG----UACC---CaGACGGCGG-CUGGCGg -5'
17010 5' -61.8 NC_004333.2 + 33959 0.66 0.373934
Target:  5'- cGuCGCAUGGGUCUG--GUCGaacaauugcgucauGCUGCCg -3'
miRNA:   3'- aC-GCGUACCCAGACggCGGC--------------UGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 22755 0.66 0.368028
Target:  5'- gGCGUGacGG-CcGCCGCCGGCaCGCUg -3'
miRNA:   3'- aCGCGUacCCaGaCGGCGGCUG-GCGG- -5'
17010 5' -61.8 NC_004333.2 + 26339 0.66 0.368028
Target:  5'- cGCGUcgcgguauucgAUGGGaUUGCCGUCGAggaaUGCCu -3'
miRNA:   3'- aCGCG-----------UACCCaGACGGCGGCUg---GCGG- -5'
17010 5' -61.8 NC_004333.2 + 32883 0.66 0.368028
Target:  5'- aGCGCccGGuG-CUGauGCUGACCGCg -3'
miRNA:   3'- aCGCGuaCC-CaGACggCGGCUGGCGg -5'
17010 5' -61.8 NC_004333.2 + 17151 0.66 0.368028
Target:  5'- aUGCGCGaGGaaGUCgUGCgCGUCGACaagGCCg -3'
miRNA:   3'- -ACGCGUaCC--CAG-ACG-GCGGCUGg--CGG- -5'
17010 5' -61.8 NC_004333.2 + 17832 0.66 0.359702
Target:  5'- -cCGCGUGaaacuGUCUGCCGgugCGGCCGCg -3'
miRNA:   3'- acGCGUACc----CAGACGGCg--GCUGGCGg -5'
17010 5' -61.8 NC_004333.2 + 20747 0.66 0.359702
Target:  5'- gGCGCcu-GGUCgacaGCCGUCG-CCGCg -3'
miRNA:   3'- aCGCGuacCCAGa---CGGCGGCuGGCGg -5'
17010 5' -61.8 NC_004333.2 + 41758 0.66 0.359702
Target:  5'- cGCGCGccgggcuaUGGGUCUGCacgaGCgaggaaGugCGCa -3'
miRNA:   3'- aCGCGU--------ACCCAGACGg---CGg-----CugGCGg -5'
17010 5' -61.8 NC_004333.2 + 20573 0.66 0.359702
Target:  5'- gGCGCGUcGGGUCgcGCCGUgGuguuuCUGCa -3'
miRNA:   3'- aCGCGUA-CCCAGa-CGGCGgCu----GGCGg -5'
17010 5' -61.8 NC_004333.2 + 38438 0.66 0.359702
Target:  5'- cGCGCAUccGGcGcUCaUGUCGCCGACgCGgCg -3'
miRNA:   3'- aCGCGUA--CC-C-AG-ACGGCGGCUG-GCgG- -5'
17010 5' -61.8 NC_004333.2 + 17207 0.66 0.35151
Target:  5'- aGgGCuuuAUGGaGUCgcgcuugacgGCCGCCGGCguauCGCCg -3'
miRNA:   3'- aCgCG---UACC-CAGa---------CGGCGGCUG----GCGG- -5'
17010 5' -61.8 NC_004333.2 + 18257 0.66 0.34345
Target:  5'- aGCGCAUGGcaaaGCgGCCGAggaUGCCg -3'
miRNA:   3'- aCGCGUACCcagaCGgCGGCUg--GCGG- -5'
17010 5' -61.8 NC_004333.2 + 32665 0.66 0.34345
Target:  5'- cGCGCuUGacgC-GCCGCCGgugACCGCCg -3'
miRNA:   3'- aCGCGuACccaGaCGGCGGC---UGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 45749 0.66 0.338679
Target:  5'- cGCGCcguaccaaGGcacgCUGCCGCuguacggcgaccaggCGACCGCCg -3'
miRNA:   3'- aCGCGuac-----CCa---GACGGCG---------------GCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 33294 0.66 0.335525
Target:  5'- cGCGCGUuGcGUCgGCCGCaucgagccaacCGGCgCGCCa -3'
miRNA:   3'- aCGCGUAcC-CAGaCGGCG-----------GCUG-GCGG- -5'
17010 5' -61.8 NC_004333.2 + 31043 0.66 0.327733
Target:  5'- cGCGCAUGcG-CUGCUGCuCGGCgGUg -3'
miRNA:   3'- aCGCGUACcCaGACGGCG-GCUGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.