miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 38458 0.66 0.831923
Target:  5'- cGCCGaCGCGGCGUUucgCGAAccGCGUg-CGc -3'
miRNA:   3'- aCGGC-GCGUCGCAA---GUUU--UGCAgaGC- -5'
17013 5' -52.6 NC_004333.2 + 19411 0.66 0.831923
Target:  5'- cGCCGCGacccGCGcggUCGAcGCGgcgCUCGc -3'
miRNA:   3'- aCGGCGCgu--CGCa--AGUUuUGCa--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 27527 0.66 0.831923
Target:  5'- cUGCCacugGCGCAGCGccgUUgcGACG-CUCGc -3'
miRNA:   3'- -ACGG----CGCGUCGCa--AGuuUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 39835 0.66 0.831923
Target:  5'- cUGCCGUGauccaggaAGUGUUCAAGACGa---- -3'
miRNA:   3'- -ACGGCGCg-------UCGCAAGUUUUGCagagc -5'
17013 5' -52.6 NC_004333.2 + 2960 0.66 0.822588
Target:  5'- aGCUGCGCgAGCGUgacgcccgUCAAcggaaugccuaGACG-CUCGc -3'
miRNA:   3'- aCGGCGCG-UCGCA--------AGUU-----------UUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 13471 0.66 0.813041
Target:  5'- cGUCGCGaaugcgcaGGCGUUCGAucuCGUCaUUGa -3'
miRNA:   3'- aCGGCGCg-------UCGCAAGUUuu-GCAG-AGC- -5'
17013 5' -52.6 NC_004333.2 + 13773 0.66 0.813041
Target:  5'- cGCuCGCGCGGCGUgUAGuugcucACGUCcacuUCGa -3'
miRNA:   3'- aCG-GCGCGUCGCAaGUUu-----UGCAG----AGC- -5'
17013 5' -52.6 NC_004333.2 + 3955 0.66 0.813041
Target:  5'- cGCCGUucuGCAG-GUagGAgagcAGCGUCUCGa -3'
miRNA:   3'- aCGGCG---CGUCgCAagUU----UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 44949 0.66 0.813041
Target:  5'- aUGCUGCcCGGCGUcaUCGGGGCGgg-CGg -3'
miRNA:   3'- -ACGGCGcGUCGCA--AGUUUUGCagaGC- -5'
17013 5' -52.6 NC_004333.2 + 17232 0.66 0.813041
Target:  5'- gGCCGC-CGGCGUaUCGccGGACGUgaUCGu -3'
miRNA:   3'- aCGGCGcGUCGCA-AGU--UUUGCAg-AGC- -5'
17013 5' -52.6 NC_004333.2 + 40380 0.66 0.812075
Target:  5'- cGCCGCGCGGCcgacucgaacccgGUUgAAGACGgg-Ca -3'
miRNA:   3'- aCGGCGCGUCG-------------CAAgUUUUGCagaGc -5'
17013 5' -52.6 NC_004333.2 + 12091 0.66 0.803293
Target:  5'- cUGgCGCGCAGCGccgCGucACGggccagCUCGu -3'
miRNA:   3'- -ACgGCGCGUCGCaa-GUuuUGCa-----GAGC- -5'
17013 5' -52.6 NC_004333.2 + 10087 0.66 0.803293
Target:  5'- aUGCCGgGUaAGcCGUUCAGcaucACGaUCUCGg -3'
miRNA:   3'- -ACGGCgCG-UC-GCAAGUUu---UGC-AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 35436 0.66 0.803293
Target:  5'- gGCgUGCGCAGUGUUUAGuGCGg-UCGu -3'
miRNA:   3'- aCG-GCGCGUCGCAAGUUuUGCagAGC- -5'
17013 5' -52.6 NC_004333.2 + 11665 0.66 0.803293
Target:  5'- aGUCGCGCAgGCGcUUCAuuuCGUCg-- -3'
miRNA:   3'- aCGGCGCGU-CGC-AAGUuuuGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 16817 0.66 0.793355
Target:  5'- cGCCGgGUgucgaAGCGUUCGuauCG-CUCGa -3'
miRNA:   3'- aCGGCgCG-----UCGCAAGUuuuGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 20973 0.66 0.793355
Target:  5'- cG-CGCGCGGCGcgggCGAGuggguGCGUUUCGa -3'
miRNA:   3'- aCgGCGCGUCGCaa--GUUU-----UGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 17298 0.66 0.793355
Target:  5'- gGCCgGCGCAGCGUccUCGAcAUGcC-CGa -3'
miRNA:   3'- aCGG-CGCGUCGCA--AGUUuUGCaGaGC- -5'
17013 5' -52.6 NC_004333.2 + 1819 0.66 0.793355
Target:  5'- gGCCGCGCcaaauccgcAGCGgcgCAuAACGgcgcccgCUCGu -3'
miRNA:   3'- aCGGCGCG---------UCGCaa-GUuUUGCa------GAGC- -5'
17013 5' -52.6 NC_004333.2 + 37738 0.67 0.783239
Target:  5'- cUGCCGCGCcuGCGcgagaUCGacGAGCGUCguuUCGu -3'
miRNA:   3'- -ACGGCGCGu-CGCa----AGU--UUUGCAG---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.