miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17017 5' -55.2 NC_004333.2 + 29332 0.66 0.739461
Target:  5'- uGCGcaCGGCaacugcguACUGCCG-CGCGGGCu -3'
miRNA:   3'- gCGCuaGCUG--------UGACGGCaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 27663 0.66 0.739461
Target:  5'- aGCGAgCGGCGCggcggcgGCCGgcaGCGGuugcGCGg -3'
miRNA:   3'- gCGCUaGCUGUGa------CGGCag-CGCU----UGC- -5'
17017 5' -55.2 NC_004333.2 + 5335 0.66 0.739461
Target:  5'- gCGCugGAUCGuCAC-GCCGcCGUGGAUGc -3'
miRNA:   3'- -GCG--CUAGCuGUGaCGGCaGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 33005 0.66 0.728979
Target:  5'- aCGCGAccuaCG-CACUGCCGcUCGCucGCc -3'
miRNA:   3'- -GCGCUa---GCuGUGACGGC-AGCGcuUGc -5'
17017 5' -55.2 NC_004333.2 + 20748 0.66 0.728979
Target:  5'- gCGCcuGGUCGACA--GCCGUCGCc-GCGc -3'
miRNA:   3'- -GCG--CUAGCUGUgaCGGCAGCGcuUGC- -5'
17017 5' -55.2 NC_004333.2 + 18780 0.66 0.728979
Target:  5'- gGCGAaCGGCGuuacGCCGuuugcuUCGCGGGCGa -3'
miRNA:   3'- gCGCUaGCUGUga--CGGC------AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 6545 0.66 0.726871
Target:  5'- cCGCGccCGACAauCUGCCGccagagcacgaGCGAGCGc -3'
miRNA:   3'- -GCGCuaGCUGU--GACGGCag---------CGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 36337 0.66 0.726871
Target:  5'- aGCGAUguacCGGCGCaagcuggagcgcGCCGUCGCGcuGAUGg -3'
miRNA:   3'- gCGCUA----GCUGUGa-----------CGGCAGCGC--UUGC- -5'
17017 5' -55.2 NC_004333.2 + 19758 0.66 0.718401
Target:  5'- gCGCGAcacCGGCGCgacaCGUUGCGAuuGCGg -3'
miRNA:   3'- -GCGCUa--GCUGUGacg-GCAGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 38554 0.66 0.707739
Target:  5'- aCGCGcucaCGGCaacgacacaGCUGCUGuUCGCGGGCa -3'
miRNA:   3'- -GCGCua--GCUG---------UGACGGC-AGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 5508 0.66 0.707739
Target:  5'- aGaCGAUCGGCGCUGU---UGCGGGCu -3'
miRNA:   3'- gC-GCUAGCUGUGACGgcaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 8947 0.66 0.707739
Target:  5'- uGCGGUCGagcauuGCACgcagcucgGCCGaCGgGAGCGc -3'
miRNA:   3'- gCGCUAGC------UGUGa-------CGGCaGCgCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 16838 0.66 0.707739
Target:  5'- aGCGGUCuGAUgaaGCUgGCCGgcaUUGCGGGCGc -3'
miRNA:   3'- gCGCUAG-CUG---UGA-CGGC---AGCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 16942 0.66 0.707739
Target:  5'- gGCGcugCGcCGCgcgGCCGUCGCGccGGCa -3'
miRNA:   3'- gCGCua-GCuGUGa--CGGCAGCGC--UUGc -5'
17017 5' -55.2 NC_004333.2 + 10812 0.66 0.707739
Target:  5'- cCGCG--CGACGCggUGCaCGUCGCGuAGCc -3'
miRNA:   3'- -GCGCuaGCUGUG--ACG-GCAGCGC-UUGc -5'
17017 5' -55.2 NC_004333.2 + 6019 0.66 0.697003
Target:  5'- uGCGAg-GACGCUGuuGcccucgggCGUGAGCGu -3'
miRNA:   3'- gCGCUagCUGUGACggCa-------GCGCUUGC- -5'
17017 5' -55.2 NC_004333.2 + 10128 0.66 0.697003
Target:  5'- gGCccaGGUCGGCAUaGCCGaccacuUCGCGAccGCGa -3'
miRNA:   3'- gCG---CUAGCUGUGaCGGC------AGCGCU--UGC- -5'
17017 5' -55.2 NC_004333.2 + 8942 0.66 0.697003
Target:  5'- uCGCGc-CGGCGCUGuCCaUCGCGuGCGc -3'
miRNA:   3'- -GCGCuaGCUGUGAC-GGcAGCGCuUGC- -5'
17017 5' -55.2 NC_004333.2 + 5431 0.66 0.697003
Target:  5'- aGCGucGUCGGCAuCUGCgaaCGCGAACa -3'
miRNA:   3'- gCGC--UAGCUGU-GACGgcaGCGCUUGc -5'
17017 5' -55.2 NC_004333.2 + 40501 0.66 0.695926
Target:  5'- cCGUGGUCGGguucgccggcaguCGaaGCgGUCGUGAACGa -3'
miRNA:   3'- -GCGCUAGCU-------------GUgaCGgCAGCGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.