miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 3' -58.6 NC_004333.2 + 36470 0.66 0.529196
Target:  5'- gACGccAGCaCGCCGCc--CGGCGCUGCGu -3'
miRNA:   3'- -UGC--UUGaGCGGUGcuaGCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 25406 0.66 0.529196
Target:  5'- gGCGAGCgCGCCugcaGCGugccggCGGCGgCCGUc -3'
miRNA:   3'- -UGCUUGaGCGG----UGCua----GCCGC-GGCGu -5'
17018 3' -58.6 NC_004333.2 + 33006 0.66 0.529196
Target:  5'- gGCGAuAC-CGCUAUcggGAUCGGCGUCGa- -3'
miRNA:   3'- -UGCU-UGaGCGGUG---CUAGCCGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 28757 0.66 0.529196
Target:  5'- cGCGAGCgccgcgUCGaCCGCGcgggucgCGGCGgCGCGa -3'
miRNA:   3'- -UGCUUG------AGC-GGUGCua-----GCCGCgGCGU- -5'
17018 3' -58.6 NC_004333.2 + 41030 0.66 0.529196
Target:  5'- uAUGAagACggCGCgCACGAUCGucgacacguuucGCGCCGCc -3'
miRNA:   3'- -UGCU--UGa-GCG-GUGCUAGC------------CGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 7816 0.66 0.529196
Target:  5'- gACGAguaguuuagcucGCUCGCCA-GAUCGacgcggccuGCGCCGg- -3'
miRNA:   3'- -UGCU------------UGAGCGGUgCUAGC---------CGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 31312 0.66 0.528151
Target:  5'- cCGAACagUCGCCcguCGAUCGccuuggccgcgacGCGCUGCu -3'
miRNA:   3'- uGCUUG--AGCGGu--GCUAGC-------------CGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 8462 0.66 0.528151
Target:  5'- cCGAGCUUGCCGaGGUCgcuugucgucaguGGCGCagGCAg -3'
miRNA:   3'- uGCUUGAGCGGUgCUAG-------------CCGCGg-CGU- -5'
17018 3' -58.6 NC_004333.2 + 29752 0.66 0.518782
Target:  5'- cGCGGugUcgaCGCCGcCGAUCgcgaGGCGuuGCGc -3'
miRNA:   3'- -UGCUugA---GCGGU-GCUAG----CCGCggCGU- -5'
17018 3' -58.6 NC_004333.2 + 26346 0.66 0.518782
Target:  5'- uACGGaacaGCUCGCCACGcacguugaugacGUCGcUGCCGUc -3'
miRNA:   3'- -UGCU----UGAGCGGUGC------------UAGCcGCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 29968 0.66 0.518782
Target:  5'- cCGAGCgcgGCCGCGcugccacCGGCGCCGa- -3'
miRNA:   3'- uGCUUGag-CGGUGCua-----GCCGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 9724 0.66 0.518782
Target:  5'- cGCGAAa-CGCCGCG-UCGGCGaCaugaGCGc -3'
miRNA:   3'- -UGCUUgaGCGGUGCuAGCCGC-Gg---CGU- -5'
17018 3' -58.6 NC_004333.2 + 38999 0.66 0.518782
Target:  5'- cCGAACUgGCauguCGA--GGCGCUGCAg -3'
miRNA:   3'- uGCUUGAgCGgu--GCUagCCGCGGCGU- -5'
17018 3' -58.6 NC_004333.2 + 13373 0.66 0.518782
Target:  5'- cACGAGCggcgUGuCCAUGAUCuGGuCGUCGCc -3'
miRNA:   3'- -UGCUUGa---GC-GGUGCUAG-CC-GCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 33160 0.66 0.518782
Target:  5'- gGCGAguuUCGCgGCG-UCGGCGUCgGCGg -3'
miRNA:   3'- -UGCUug-AGCGgUGCuAGCCGCGG-CGU- -5'
17018 3' -58.6 NC_004333.2 + 6880 0.66 0.518782
Target:  5'- gGCGAGCUCgGCCuCG-UCGaaguCGCCGCc -3'
miRNA:   3'- -UGCUUGAG-CGGuGCuAGCc---GCGGCGu -5'
17018 3' -58.6 NC_004333.2 + 19393 0.66 0.509478
Target:  5'- cGCGAugggaagucgcGC-CGCCGCGAcccgcgcggucgacgCGGCGCuCGCGc -3'
miRNA:   3'- -UGCU-----------UGaGCGGUGCUa--------------GCCGCG-GCGU- -5'
17018 3' -58.6 NC_004333.2 + 37452 0.66 0.508449
Target:  5'- gACGAACggCGCCGacauucCGGCGCuCGCc -3'
miRNA:   3'- -UGCUUGa-GCGGUgcua--GCCGCG-GCGu -5'
17018 3' -58.6 NC_004333.2 + 32077 0.66 0.508449
Target:  5'- cGCGAcgaUCGCauaGAUCGGCGUCGg- -3'
miRNA:   3'- -UGCUug-AGCGgugCUAGCCGCGGCgu -5'
17018 3' -58.6 NC_004333.2 + 18409 0.66 0.508449
Target:  5'- cCGaAGCgcaaCGCCucGCGAUCGGCGgCGUc -3'
miRNA:   3'- uGC-UUGa---GCGG--UGCUAGCCGCgGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.