miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17018 5' -53.5 NC_004333.2 + 19799 0.66 0.780456
Target:  5'- -gCGUUGAGUgcGAUGCGCugcugaccgaugccGGCCCGa -3'
miRNA:   3'- gaGCAGCUCGuuUUGCGCGu-------------UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 28902 0.66 0.779432
Target:  5'- gCUCG-CGAGCAGcaccaggucgccgGAUGCGUGcauguucgcacguccAGCCCGu -3'
miRNA:   3'- -GAGCaGCUCGUU-------------UUGCGCGU---------------UCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 37106 0.66 0.77635
Target:  5'- -aCGUCGGGCAGcugcggGGCGUGCucgaagcGCUCAc -3'
miRNA:   3'- gaGCAGCUCGUU------UUGCGCGuu-----CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 42029 0.66 0.77635
Target:  5'- -gCGgccaaCGAGCGGGGCGUGCucGCCgAa -3'
miRNA:   3'- gaGCa----GCUCGUUUUGCGCGuuCGGgU- -5'
17018 5' -53.5 NC_004333.2 + 17383 0.66 0.77635
Target:  5'- -aCGUCGAGCA--GCGCauCGAGCUg- -3'
miRNA:   3'- gaGCAGCUCGUuuUGCGc-GUUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 23649 0.66 0.77635
Target:  5'- cCUCGccUUGAgGCGGAACGCcGCcGGCCUc -3'
miRNA:   3'- -GAGC--AGCU-CGUUUUGCG-CGuUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 38422 0.66 0.77635
Target:  5'- gCUCGUUGA-CGAcgGGCGCGCAuccggcGCUCAu -3'
miRNA:   3'- -GAGCAGCUcGUU--UUGCGCGUu-----CGGGU- -5'
17018 5' -53.5 NC_004333.2 + 26855 0.66 0.77635
Target:  5'- aCUUGUCGGGCAu--UGUGuCAAGCUUu -3'
miRNA:   3'- -GAGCAGCUCGUuuuGCGC-GUUCGGGu -5'
17018 5' -53.5 NC_004333.2 + 4599 0.66 0.77635
Target:  5'- aCUCGcguUCGAGgcGAGCGCGCGAcacGCCa- -3'
miRNA:   3'- -GAGC---AGCUCguUUUGCGCGUU---CGGgu -5'
17018 5' -53.5 NC_004333.2 + 37490 0.66 0.77532
Target:  5'- -gCGUCGAaccgaguGCAuAGCGUGCAccGGCCg- -3'
miRNA:   3'- gaGCAGCU-------CGUuUUGCGCGU--UCGGgu -5'
17018 5' -53.5 NC_004333.2 + 393 0.66 0.765979
Target:  5'- gUUGcCGAGCGcguaGAGCGCGCGAuCCUu -3'
miRNA:   3'- gAGCaGCUCGU----UUUGCGCGUUcGGGu -5'
17018 5' -53.5 NC_004333.2 + 22547 0.66 0.765979
Target:  5'- gUUGcCGAGCGacGAGCGCGCGGugaaaCCCGc -3'
miRNA:   3'- gAGCaGCUCGU--UUUGCGCGUUc----GGGU- -5'
17018 5' -53.5 NC_004333.2 + 38676 0.66 0.765979
Target:  5'- uUCGUCGAGCAGcuggccgcCGCGCugaaauuCCCGc -3'
miRNA:   3'- gAGCAGCUCGUUuu------GCGCGuuc----GGGU- -5'
17018 5' -53.5 NC_004333.2 + 41742 0.66 0.765979
Target:  5'- aUCGgcgCGGGCGAcuCGCGCGccgGGCUa- -3'
miRNA:   3'- gAGCa--GCUCGUUuuGCGCGU---UCGGgu -5'
17018 5' -53.5 NC_004333.2 + 2240 0.66 0.765979
Target:  5'- gCUCGaCGAGCugcuucuCGCGCAacgcGGCCa- -3'
miRNA:   3'- -GAGCaGCUCGuuuu---GCGCGU----UCGGgu -5'
17018 5' -53.5 NC_004333.2 + 11591 0.66 0.765979
Target:  5'- aUUGUCGAcGUacaaauccuGAAACGCGCcGGCCg- -3'
miRNA:   3'- gAGCAGCU-CG---------UUUUGCGCGuUCGGgu -5'
17018 5' -53.5 NC_004333.2 + 6749 0.66 0.762839
Target:  5'- -gCGUCGAGCAGcGCcuguucgaucauguGCGCGuGCUCGa -3'
miRNA:   3'- gaGCAGCUCGUUuUG--------------CGCGUuCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 8950 0.66 0.755462
Target:  5'- --gGUCGAGCAuuGCaCGC-AGCUCGg -3'
miRNA:   3'- gagCAGCUCGUuuUGcGCGuUCGGGU- -5'
17018 5' -53.5 NC_004333.2 + 28966 0.66 0.755462
Target:  5'- -gCGcCGuGCGGAACGcCGCGAGaauCCCAu -3'
miRNA:   3'- gaGCaGCuCGUUUUGC-GCGUUC---GGGU- -5'
17018 5' -53.5 NC_004333.2 + 39223 0.66 0.755462
Target:  5'- gUCGgcCGAGCu--GCGUGCAAuGCUCGa -3'
miRNA:   3'- gAGCa-GCUCGuuuUGCGCGUU-CGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.