miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17019 5' -58.1 NC_004333.2 + 28540 0.66 0.577922
Target:  5'- cUGUUGACGGCcagcgucGGcCGCGCucgCCGcGCu -3'
miRNA:   3'- aGCAACUGCUGc------CC-GCGCGua-GGC-CG- -5'
17019 5' -58.1 NC_004333.2 + 41466 0.66 0.577922
Target:  5'- gUCGUgauccaUGGCGAgcucgagaaguCGGaGCGCGUGUuaGGCg -3'
miRNA:   3'- -AGCA------ACUGCU-----------GCC-CGCGCGUAggCCG- -5'
17019 5' -58.1 NC_004333.2 + 14224 0.66 0.56728
Target:  5'- -----cGCGACGGGCaucacgGUGcCGUCUGGCg -3'
miRNA:   3'- agcaacUGCUGCCCG------CGC-GUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 11977 0.66 0.56728
Target:  5'- gCGUcGACGAuCGcGGC-CGUAUCgCGGUg -3'
miRNA:   3'- aGCAaCUGCU-GC-CCGcGCGUAG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 21207 0.66 0.56728
Target:  5'- aCGUgcgcaucaaugGGCGGCcgucGCGCGCAUCUGGa -3'
miRNA:   3'- aGCAa----------CUGCUGcc--CGCGCGUAGGCCg -5'
17019 5' -58.1 NC_004333.2 + 38933 0.66 0.56728
Target:  5'- cCGcacGCGGCGaGGCGCcccCGUUCGGCg -3'
miRNA:   3'- aGCaacUGCUGC-CCGCGc--GUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 10799 0.66 0.56728
Target:  5'- aCGaUGAgGACGGcCGCGCGaCgCGGUg -3'
miRNA:   3'- aGCaACUgCUGCCcGCGCGUaG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 41403 0.66 0.556688
Target:  5'- gUCGUauGCGAucggcuaccuCGaGGCGCGCGaCCGGg -3'
miRNA:   3'- -AGCAacUGCU----------GC-CCGCGCGUaGGCCg -5'
17019 5' -58.1 NC_004333.2 + 35711 0.66 0.556688
Target:  5'- ---aUGACGAccCGGGCGUGC---CGGCc -3'
miRNA:   3'- agcaACUGCU--GCCCGCGCGuagGCCG- -5'
17019 5' -58.1 NC_004333.2 + 6662 0.66 0.546155
Target:  5'- cUCGgcGcgcuCGAgCaGGCGCGCAUCCGccGCu -3'
miRNA:   3'- -AGCaaCu---GCU-GcCCGCGCGUAGGC--CG- -5'
17019 5' -58.1 NC_004333.2 + 31178 0.66 0.546155
Target:  5'- ----cGGCGACGGcGUaugccgcgaguuGCGCGUUCGGUu -3'
miRNA:   3'- agcaaCUGCUGCC-CG------------CGCGUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 16865 0.66 0.546155
Target:  5'- -aGgcGAuCGACGGGCGacuGUUCGGCa -3'
miRNA:   3'- agCaaCU-GCUGCCCGCgcgUAGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 16993 0.66 0.546155
Target:  5'- gCGUUGuCGAguacGGCGCGCcGUCUGGg -3'
miRNA:   3'- aGCAACuGCUgc--CCGCGCG-UAGGCCg -5'
17019 5' -58.1 NC_004333.2 + 46180 0.66 0.546155
Target:  5'- aUGUgGGCGACcgaGGGCuggGCGCGUCUcGCg -3'
miRNA:   3'- aGCAaCUGCUG---CCCG---CGCGUAGGcCG- -5'
17019 5' -58.1 NC_004333.2 + 11344 0.66 0.535686
Target:  5'- gCGgccGGCGAUGGccguaGCGCGCAcucgaCGGCa -3'
miRNA:   3'- aGCaa-CUGCUGCC-----CGCGCGUag---GCCG- -5'
17019 5' -58.1 NC_004333.2 + 11217 0.66 0.535686
Target:  5'- aCG-UGAUu-CGGGCGCGgCuccuugCCGGCg -3'
miRNA:   3'- aGCaACUGcuGCCCGCGC-Gua----GGCCG- -5'
17019 5' -58.1 NC_004333.2 + 9630 0.66 0.535686
Target:  5'- cCGgcUGcCGGCGGcGCGCcuGCGcCCGGCu -3'
miRNA:   3'- aGCa-ACuGCUGCC-CGCG--CGUaGGCCG- -5'
17019 5' -58.1 NC_004333.2 + 40863 0.66 0.535686
Target:  5'- gUCGccGGCGAUGGuCGCGCGaCuCGGUa -3'
miRNA:   3'- -AGCaaCUGCUGCCcGCGCGUaG-GCCG- -5'
17019 5' -58.1 NC_004333.2 + 13892 0.66 0.535686
Target:  5'- gUCGgccGGC-ACGGGCuGCGCGg-CGGCu -3'
miRNA:   3'- -AGCaa-CUGcUGCCCG-CGCGUagGCCG- -5'
17019 5' -58.1 NC_004333.2 + 12276 0.66 0.525288
Target:  5'- cCGaugUGGCGuauaACGGcGUGCGCGUcgcaacgggCCGGCu -3'
miRNA:   3'- aGCa--ACUGC----UGCC-CGCGCGUA---------GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.