miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17020 5' -53 NC_004333.2 + 26334 0.66 0.850979
Target:  5'- ---cGCGCcGCGUcGCGGUauUCGAUGGg -3'
miRNA:   3'- gccaUGUGuUGCA-CGCCA--AGCUGCCg -5'
17020 5' -53 NC_004333.2 + 21197 0.66 0.850979
Target:  5'- uCGGgGCAUuACGUGCGcaUCaaugGGCGGCc -3'
miRNA:   3'- -GCCaUGUGuUGCACGCcaAG----CUGCCG- -5'
17020 5' -53 NC_004333.2 + 37302 0.66 0.850979
Target:  5'- aGGcgACGCGuuccagucggucGCG-GCGGUgcUCGACGcGCu -3'
miRNA:   3'- gCCa-UGUGU------------UGCaCGCCA--AGCUGC-CG- -5'
17020 5' -53 NC_004333.2 + 16878 0.66 0.850979
Target:  5'- uCGGcgucgGCGCAG-GUGCGGccggucUCGcCGGCa -3'
miRNA:   3'- -GCCa----UGUGUUgCACGCCa-----AGCuGCCG- -5'
17020 5' -53 NC_004333.2 + 28998 0.66 0.842294
Target:  5'- cCGGgu--CGGCGUGCGcaUCGcgcGCGGCu -3'
miRNA:   3'- -GCCauguGUUGCACGCcaAGC---UGCCG- -5'
17020 5' -53 NC_004333.2 + 2421 0.66 0.842294
Target:  5'- -cGUACagcgGCAGCGUGCcuuGGUaCGgcGCGGCg -3'
miRNA:   3'- gcCAUG----UGUUGCACG---CCAaGC--UGCCG- -5'
17020 5' -53 NC_004333.2 + 41578 0.66 0.842294
Target:  5'- gCGGcGCugGGCG-GCGcGccgUGGCGGCg -3'
miRNA:   3'- -GCCaUGugUUGCaCGC-Caa-GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 32603 0.66 0.842294
Target:  5'- --uUGCGCGccgcguauucGCGUGCGGcUUCGACGuugauGCa -3'
miRNA:   3'- gccAUGUGU----------UGCACGCC-AAGCUGC-----CG- -5'
17020 5' -53 NC_004333.2 + 75 0.66 0.841413
Target:  5'- gCGGUGCGC-GCGccCGGUugccgccugcgccUCGuCGGCa -3'
miRNA:   3'- -GCCAUGUGuUGCacGCCA-------------AGCuGCCG- -5'
17020 5' -53 NC_004333.2 + 3281 0.66 0.834284
Target:  5'- uGGUAgGCAuacgcccuuucuccuUGUGCGcg-CGGCGGCg -3'
miRNA:   3'- gCCAUgUGUu--------------GCACGCcaaGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 13929 0.66 0.833383
Target:  5'- aCGG-ACACAugG-GCGucaaGUgcgacCGGCGGCg -3'
miRNA:   3'- -GCCaUGUGUugCaCGC----CAa----GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 14318 0.66 0.833383
Target:  5'- uCGGcUGCAgCAGCGUG-GGUuauUCGAgacaaucuCGGCg -3'
miRNA:   3'- -GCC-AUGU-GUUGCACgCCA---AGCU--------GCCG- -5'
17020 5' -53 NC_004333.2 + 4266 0.66 0.833383
Target:  5'- uCGGUGCGCuACGUG-GcGUUUGGuCGcGCa -3'
miRNA:   3'- -GCCAUGUGuUGCACgC-CAAGCU-GC-CG- -5'
17020 5' -53 NC_004333.2 + 17605 0.66 0.833383
Target:  5'- gCGGU---CGAUGUcGCGGUguUCGGCuGGCa -3'
miRNA:   3'- -GCCAuguGUUGCA-CGCCA--AGCUG-CCG- -5'
17020 5' -53 NC_004333.2 + 7507 0.66 0.83248
Target:  5'- gCGGU-CGCGA-GUGCGccgaacaGUUCGuCGGCc -3'
miRNA:   3'- -GCCAuGUGUUgCACGC-------CAAGCuGCCG- -5'
17020 5' -53 NC_004333.2 + 3902 0.66 0.824256
Target:  5'- uGGUGuCGuggUAGCGccagGCGGcagCGGCGGCa -3'
miRNA:   3'- gCCAU-GU---GUUGCa---CGCCaa-GCUGCCG- -5'
17020 5' -53 NC_004333.2 + 10006 0.66 0.824256
Target:  5'- gCGGccauUGCgaGCGGCGUGCcaaGaUCGGCGGCc -3'
miRNA:   3'- -GCC----AUG--UGUUGCACGc--CaAGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 12718 0.66 0.824256
Target:  5'- aCGGUGC-CGACGuUGaCGGUcaCGACcGCa -3'
miRNA:   3'- -GCCAUGuGUUGC-AC-GCCAa-GCUGcCG- -5'
17020 5' -53 NC_004333.2 + 39717 0.66 0.821478
Target:  5'- aGGUACgaaaauccugugggACGugGUGgcCGGgcagaucaacgUCGGCGGCa -3'
miRNA:   3'- gCCAUG--------------UGUugCAC--GCCa----------AGCUGCCG- -5'
17020 5' -53 NC_004333.2 + 39487 0.66 0.814924
Target:  5'- aCGGUcgGCACGuucgcCGUGCuGaacgcCGACGGCa -3'
miRNA:   3'- -GCCA--UGUGUu----GCACGcCaa---GCUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.