miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17021 5' -58.7 NC_004333.2 + 4526 0.66 0.53944
Target:  5'- uUGuuGCGAUCCugguggugcaGGCCGGacGCaCGGGCc -3'
miRNA:   3'- cAUggCGCUAGG----------CUGGCU--CGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 20554 0.66 0.53944
Target:  5'- -gGCCGCGccgCUGAUCGucGGCgcgUCGGGUc -3'
miRNA:   3'- caUGGCGCua-GGCUGGC--UCG---AGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 8905 0.66 0.538396
Target:  5'- -aACCuGCGAUCgCGcgcgcgugcgccuGCCGGccGCUCGGGg -3'
miRNA:   3'- caUGG-CGCUAG-GC-------------UGGCU--CGAGCCCg -5'
17021 5' -58.7 NC_004333.2 + 34285 0.66 0.52903
Target:  5'- -cGCCGCGcagcccgugCCGGCCGAcuucGCgCGGcGCg -3'
miRNA:   3'- caUGGCGCua-------GGCUGGCU----CGaGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 3017 0.66 0.52903
Target:  5'- -aAgCGCGGccaguaUCgGGCCGAcUUCGGGCg -3'
miRNA:   3'- caUgGCGCU------AGgCUGGCUcGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 28140 0.66 0.52903
Target:  5'- cGUACUGCGcgCCG-CCGAGgUUGacaGCg -3'
miRNA:   3'- -CAUGGCGCuaGGCuGGCUCgAGCc--CG- -5'
17021 5' -58.7 NC_004333.2 + 23944 0.66 0.518695
Target:  5'- cGUAgUGCGGUUCGugcccGCCGGGUgCGGGa -3'
miRNA:   3'- -CAUgGCGCUAGGC-----UGGCUCGaGCCCg -5'
17021 5' -58.7 NC_004333.2 + 28763 0.66 0.518695
Target:  5'- -cGCCGCG--UCGACCGcgcGGgUCGcGGCg -3'
miRNA:   3'- caUGGCGCuaGGCUGGC---UCgAGC-CCG- -5'
17021 5' -58.7 NC_004333.2 + 10158 0.66 0.518695
Target:  5'- gGUAUCGaacgGGUCgGcgcacuggaaGCCGAGCgacgCGGGCa -3'
miRNA:   3'- -CAUGGCg---CUAGgC----------UGGCUCGa---GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 8993 0.66 0.498274
Target:  5'- -gGCgGCGA-CCGACgCGGcGUUCGcGGCu -3'
miRNA:   3'- caUGgCGCUaGGCUG-GCU-CGAGC-CCG- -5'
17021 5' -58.7 NC_004333.2 + 8613 0.66 0.498274
Target:  5'- --uUCGCGAUgcacgaagCCGAugcgcgacgUCGAGCUCGGcGCg -3'
miRNA:   3'- cauGGCGCUA--------GGCU---------GGCUCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 20160 0.66 0.498274
Target:  5'- -aGCCuacuCGG-CCG-CCG-GCUCGGGCg -3'
miRNA:   3'- caUGGc---GCUaGGCuGGCuCGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 5537 0.66 0.498274
Target:  5'- aUGCCGUGG-CCGGCgacGGCUUGGcGCg -3'
miRNA:   3'- cAUGGCGCUaGGCUGgc-UCGAGCC-CG- -5'
17021 5' -58.7 NC_004333.2 + 17680 0.66 0.488198
Target:  5'- -aGCC-UGGU-CGGCCGcacGCUCGGGCu -3'
miRNA:   3'- caUGGcGCUAgGCUGGCu--CGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 18888 0.66 0.487196
Target:  5'- -aACCG-GAUCgCGAUgGAcgcgaucaaagcgGCUCGGGCc -3'
miRNA:   3'- caUGGCgCUAG-GCUGgCU-------------CGAGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 30417 0.67 0.478219
Target:  5'- uUACCGCGcggcgCCGGCUGAauGCUUGcGCa -3'
miRNA:   3'- cAUGGCGCua---GGCUGGCU--CGAGCcCG- -5'
17021 5' -58.7 NC_004333.2 + 25423 0.67 0.468342
Target:  5'- cGUGCCgGCGG--CGGCCGucacGC-CGGGCg -3'
miRNA:   3'- -CAUGG-CGCUagGCUGGCu---CGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 47496 0.67 0.468342
Target:  5'- -gAUCGCGcUC--ACCGAGCaCGGGCa -3'
miRNA:   3'- caUGGCGCuAGgcUGGCUCGaGCCCG- -5'
17021 5' -58.7 NC_004333.2 + 25007 0.67 0.45857
Target:  5'- -aACgGCGcaCCGACCGAcGUgaCGGGCg -3'
miRNA:   3'- caUGgCGCuaGGCUGGCU-CGa-GCCCG- -5'
17021 5' -58.7 NC_004333.2 + 39208 0.67 0.45857
Target:  5'- cGgcCCGCGcAUCCcgucGGCCGAGCUgCGuGCa -3'
miRNA:   3'- -CauGGCGC-UAGG----CUGGCUCGA-GCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.