miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 3' -58.8 NC_004333.2 + 44633 0.65 0.52797
Target:  5'- cGCUGCGCGGcaccGCGuugaucccgcuuUACGCCGaUCAGc -3'
miRNA:   3'- -CGGCGCGCCa---UGCu-----------AUGCGGC-GGUCa -5'
17023 3' -58.8 NC_004333.2 + 8913 0.66 0.519674
Target:  5'- aUCGCGCGc-GCG-UGCGCCuGCCGGc -3'
miRNA:   3'- cGGCGCGCcaUGCuAUGCGG-CGGUCa -5'
17023 3' -58.8 NC_004333.2 + 38377 0.66 0.519674
Target:  5'- uGUCGCGUgucgGGUGCGccgGCGUgaCGCCGGc -3'
miRNA:   3'- -CGGCGCG----CCAUGCua-UGCG--GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 17410 0.66 0.509377
Target:  5'- cGCaGCGCGGUcacgacgcgcugACGAUcaaaACGUCGcCCGGg -3'
miRNA:   3'- -CGgCGCGCCA------------UGCUA----UGCGGC-GGUCa -5'
17023 3' -58.8 NC_004333.2 + 4068 0.66 0.509377
Target:  5'- aGCCGcCGCGaaACGAUGCgaagucGCCGCCc-- -3'
miRNA:   3'- -CGGC-GCGCcaUGCUAUG------CGGCGGuca -5'
17023 3' -58.8 NC_004333.2 + 14747 0.66 0.509377
Target:  5'- uGCCGgacuCGCGGcUACGGUuCGgCGCgCAGUc -3'
miRNA:   3'- -CGGC----GCGCC-AUGCUAuGCgGCG-GUCA- -5'
17023 3' -58.8 NC_004333.2 + 4804 0.66 0.499166
Target:  5'- cGUCGCGUG--ACGcucAUACGCCGCCcGg -3'
miRNA:   3'- -CGGCGCGCcaUGC---UAUGCGGCGGuCa -5'
17023 3' -58.8 NC_004333.2 + 29985 0.66 0.499166
Target:  5'- uGCCGCGCGcacgACGA-GCGCaucacccggcaCGCCGGc -3'
miRNA:   3'- -CGGCGCGCca--UGCUaUGCG-----------GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 38860 0.66 0.499166
Target:  5'- aCCGgGCGccaUACGA-ACGCCGCCcGUc -3'
miRNA:   3'- cGGCgCGCc--AUGCUaUGCGGCGGuCA- -5'
17023 3' -58.8 NC_004333.2 + 8983 0.66 0.49815
Target:  5'- gGCCGUGCGcGgcgGCGAccgACGCggcguucgcggcuUGCCAGg -3'
miRNA:   3'- -CGGCGCGC-Ca--UGCUa--UGCG-------------GCGGUCa -5'
17023 3' -58.8 NC_004333.2 + 27434 0.66 0.49612
Target:  5'- aGCCGCGUcg-GCGAUguccggcagcgcgcGCGCCGUCAu- -3'
miRNA:   3'- -CGGCGCGccaUGCUA--------------UGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 28886 0.66 0.489047
Target:  5'- uGCCGCGCGaucGCGcucgGCGCagGCCGGc -3'
miRNA:   3'- -CGGCGCGCca-UGCua--UGCGg-CGGUCa -5'
17023 3' -58.8 NC_004333.2 + 23050 0.66 0.489047
Target:  5'- gGCCGCGaacGUGC---GCGCCGCCGu- -3'
miRNA:   3'- -CGGCGCgc-CAUGcuaUGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 11017 0.66 0.489047
Target:  5'- cGCCGCGC--UGCGggAUGCCGCa--- -3'
miRNA:   3'- -CGGCGCGccAUGCuaUGCGGCGguca -5'
17023 3' -58.8 NC_004333.2 + 622 0.66 0.489047
Target:  5'- cCCGacaGCGGgcCGG--UGCUGCCAGUg -3'
miRNA:   3'- cGGCg--CGCCauGCUauGCGGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 33345 0.66 0.479026
Target:  5'- cGuuGCGCGaGaACGGcGCGCCGUCGu- -3'
miRNA:   3'- -CggCGCGC-CaUGCUaUGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 18771 0.66 0.479026
Target:  5'- cGCCGCGaCGGcgaacgGCGuUACGCCGUUu-- -3'
miRNA:   3'- -CGGCGC-GCCa-----UGCuAUGCGGCGGuca -5'
17023 3' -58.8 NC_004333.2 + 29748 0.67 0.469106
Target:  5'- cGCU-CGCGGUGuCGA--CGCCGCCGa- -3'
miRNA:   3'- -CGGcGCGCCAU-GCUauGCGGCGGUca -5'
17023 3' -58.8 NC_004333.2 + 28425 0.67 0.46812
Target:  5'- uGUCGCGcCGGUGuCGcgcugauucauGUACuugucggGCCGCCAGUu -3'
miRNA:   3'- -CGGCGC-GCCAU-GC-----------UAUG-------CGGCGGUCA- -5'
17023 3' -58.8 NC_004333.2 + 28658 0.67 0.466151
Target:  5'- cGCCGgauCGCGGUcgcagaauuccgguGCG-UGCuGCUGCCAGa -3'
miRNA:   3'- -CGGC---GCGCCA--------------UGCuAUG-CGGCGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.