miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17023 5' -52.9 NC_004333.2 + 40743 0.66 0.841279
Target:  5'- gGGCCGUCucgugcagcucuGGgcgccgCGCGUCGAaggcaaggacACGGCGa -3'
miRNA:   3'- gCUGGCAG------------UUa-----GCGCAGCU----------UGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 45017 0.66 0.841279
Target:  5'- cCGGCCGcUCGAccgCGCGUgGcgcuGGCGGCGc -3'
miRNA:   3'- -GCUGGC-AGUUa--GCGCAgC----UUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 21879 0.66 0.841279
Target:  5'- uCGACCGgCuuUCGCaUCG-ACGGCGc -3'
miRNA:   3'- -GCUGGCaGuuAGCGcAGCuUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 13342 0.66 0.84039
Target:  5'- aCGACCcuuucggcacgguGUaCGggCGCGgcaCGAGCGGCGUg -3'
miRNA:   3'- -GCUGG-------------CA-GUuaGCGCa--GCUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 5135 0.66 0.832297
Target:  5'- uCGuCCGUCAcgggCGagccgcccguguUGUCGAGCAGCGc -3'
miRNA:   3'- -GCuGGCAGUua--GC------------GCAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 11954 0.66 0.830474
Target:  5'- aGGCgGUCGAgcgccuugcacgCGCGUCGAcgaucGCGGcCGUa -3'
miRNA:   3'- gCUGgCAGUUa-----------GCGCAGCU-----UGUC-GCA- -5'
17023 5' -52.9 NC_004333.2 + 28888 0.66 0.823099
Target:  5'- aCGGCCGUguGcUUGCucgCGAGCAGCa- -3'
miRNA:   3'- -GCUGGCAguU-AGCGca-GCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 2974 0.66 0.813694
Target:  5'- uGGCCGggcuUCGUGgcgCGGACAGCu- -3'
miRNA:   3'- gCUGGCaguuAGCGCa--GCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 9276 0.66 0.813694
Target:  5'- uGGCCGUgcCGAUCaGCG-CGAaGCGGCGc -3'
miRNA:   3'- gCUGGCA--GUUAG-CGCaGCU-UGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 10990 0.66 0.813694
Target:  5'- -cACCGgcg--CGCGUCGugAGCGGCGUg -3'
miRNA:   3'- gcUGGCaguuaGCGCAGC--UUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 26478 0.66 0.813694
Target:  5'- aCGugCG-CAuagagCGCGUCGAGCuGCu- -3'
miRNA:   3'- -GCugGCaGUua---GCGCAGCUUGuCGca -5'
17023 5' -52.9 NC_004333.2 + 26382 0.66 0.812743
Target:  5'- -uGCCGUCGGUCGUGauagcgcUUGGcuGCAGCGc -3'
miRNA:   3'- gcUGGCAGUUAGCGC-------AGCU--UGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 38304 0.66 0.804093
Target:  5'- gCGACCGUgCA--CGCGgCGAcCGGCGa -3'
miRNA:   3'- -GCUGGCA-GUuaGCGCaGCUuGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 17371 0.66 0.804093
Target:  5'- -cGCUGUgGGagGaCGUCGAGCAGCGc -3'
miRNA:   3'- gcUGGCAgUUagC-GCAGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 23426 0.67 0.794306
Target:  5'- gCGAUCGUCGc-CGCGUucgUGAGCGGCu- -3'
miRNA:   3'- -GCUGGCAGUuaGCGCA---GCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 19357 0.67 0.784345
Target:  5'- --uUCGUCGAcaUCGCGcUCGAGCAGUu- -3'
miRNA:   3'- gcuGGCAGUU--AGCGC-AGCUUGUCGca -5'
17023 5' -52.9 NC_004333.2 + 30833 0.67 0.784345
Target:  5'- uCGACaccgCGUCGuagaaCGCGUCGAGCgccuGGCGg -3'
miRNA:   3'- -GCUG----GCAGUua---GCGCAGCUUG----UCGCa -5'
17023 5' -52.9 NC_004333.2 + 3783 0.67 0.784345
Target:  5'- aGGCCGUuguaccgcgCAcgCGcCGcCGAGCAGCGc -3'
miRNA:   3'- gCUGGCA---------GUuaGC-GCaGCUUGUCGCa -5'
17023 5' -52.9 NC_004333.2 + 37325 0.67 0.774221
Target:  5'- gCGG-CGUCAAgCGCGU--GACAGCGUa -3'
miRNA:   3'- -GCUgGCAGUUaGCGCAgcUUGUCGCA- -5'
17023 5' -52.9 NC_004333.2 + 2307 0.67 0.774221
Target:  5'- uGGCCGgCAcgccCGCGUUGAACuGGCGg -3'
miRNA:   3'- gCUGGCaGUua--GCGCAGCUUG-UCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.