miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17025 3' -56.5 NC_004333.2 + 6911 0.66 0.621097
Target:  5'- uUCGuCuUGACGCCUUCGguGuCGaUCUg -3'
miRNA:   3'- -AGCuGuACUGCGGAAGCguC-GC-GGAg -5'
17025 3' -56.5 NC_004333.2 + 43277 0.66 0.621097
Target:  5'- gCGAC--GGCGCaCUaUCGCAGCGCg-- -3'
miRNA:   3'- aGCUGuaCUGCG-GA-AGCGUCGCGgag -5'
17025 3' -56.5 NC_004333.2 + 14385 0.66 0.621097
Target:  5'- gUCGGCAau-UGCCUgCGCGGuCGCCa- -3'
miRNA:   3'- -AGCUGUacuGCGGAaGCGUC-GCGGag -5'
17025 3' -56.5 NC_004333.2 + 45251 0.66 0.621097
Target:  5'- cCGGCAUcgaaGCGCg--CGUGGCGCCUUg -3'
miRNA:   3'- aGCUGUAc---UGCGgaaGCGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 21088 0.66 0.610027
Target:  5'- gCGACGUGcggcuucacgaACGCCgucggucugaugUUCGCgAGCGCCc- -3'
miRNA:   3'- aGCUGUAC-----------UGCGG------------AAGCG-UCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 6738 0.66 0.610027
Target:  5'- cCGACucgcccGCGUCga-GCAGCGCCUg -3'
miRNA:   3'- aGCUGuac---UGCGGaagCGUCGCGGAg -5'
17025 3' -56.5 NC_004333.2 + 31135 0.66 0.598976
Target:  5'- gCGAgCAUGACGCCaUUggccUGCAGCGUg-- -3'
miRNA:   3'- aGCU-GUACUGCGG-AA----GCGUCGCGgag -5'
17025 3' -56.5 NC_004333.2 + 27505 0.66 0.598976
Target:  5'- cCGGCGUcaucccguGCGCCUccugccacuggCGCAGCGCCg- -3'
miRNA:   3'- aGCUGUAc-------UGCGGAa----------GCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 18270 0.66 0.597872
Target:  5'- gCGGCcgagGAUGCCgcgcgcggcccgaUcgCGCAGCGCUUCg -3'
miRNA:   3'- aGCUGua--CUGCGG-------------Aa-GCGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 5056 0.66 0.576969
Target:  5'- gUUGGCc-GACGUCggCGCGGCGCUg- -3'
miRNA:   3'- -AGCUGuaCUGCGGaaGCGUCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 30090 0.66 0.576969
Target:  5'- -gGACGUGGCGCgcUCGCAGagaauCGCC-Ca -3'
miRNA:   3'- agCUGUACUGCGgaAGCGUC-----GCGGaG- -5'
17025 3' -56.5 NC_004333.2 + 12482 0.66 0.576969
Target:  5'- cCGACAcu-CGCgUUCGCgacugaagGGCGUCUCg -3'
miRNA:   3'- aGCUGUacuGCGgAAGCG--------UCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 11914 0.66 0.576969
Target:  5'- cCGGCAUG-CGCagcggCGCGcGCGCCa- -3'
miRNA:   3'- aGCUGUACuGCGgaa--GCGU-CGCGGag -5'
17025 3' -56.5 NC_004333.2 + 17401 0.66 0.566029
Target:  5'- gUCGuCAUGACGg--UCGCcGCGCCg- -3'
miRNA:   3'- -AGCuGUACUGCggaAGCGuCGCGGag -5'
17025 3' -56.5 NC_004333.2 + 9792 0.66 0.562758
Target:  5'- cCGGCGUcACGCCggCGCacccgacacgcgacAGCGCgUCg -3'
miRNA:   3'- aGCUGUAcUGCGGaaGCG--------------UCGCGgAG- -5'
17025 3' -56.5 NC_004333.2 + 27588 0.67 0.555145
Target:  5'- gUGAUgcccGACGUCgaauagCGCGGCGCCUUc -3'
miRNA:   3'- aGCUGua--CUGCGGaa----GCGUCGCGGAG- -5'
17025 3' -56.5 NC_004333.2 + 34305 0.67 0.555145
Target:  5'- cCGACuucGCGCgg-CGCGGCGCgCUCa -3'
miRNA:   3'- aGCUGuacUGCGgaaGCGUCGCG-GAG- -5'
17025 3' -56.5 NC_004333.2 + 13841 0.67 0.544322
Target:  5'- uUCGACGacgGGCGCCgcgucgagCGCAuugagcGCGCCg- -3'
miRNA:   3'- -AGCUGUa--CUGCGGaa------GCGU------CGCGGag -5'
17025 3' -56.5 NC_004333.2 + 39127 0.67 0.544322
Target:  5'- aUCGGCGUcGACGUg-UCGCAGguCGCCa- -3'
miRNA:   3'- -AGCUGUA-CUGCGgaAGCGUC--GCGGag -5'
17025 3' -56.5 NC_004333.2 + 7405 0.67 0.544322
Target:  5'- gUCGcCGUGuccuUGCCUUcgacgCGCGGCGCC-Ca -3'
miRNA:   3'- -AGCuGUACu---GCGGAA-----GCGUCGCGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.