miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17026 5' -53.2 NC_004333.2 + 1390 0.66 0.798225
Target:  5'- -aGACGGcacgcuUGGAcGUGCCgagcaGCGCGGCg -3'
miRNA:   3'- agCUGCUuu----ACUU-CGCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 25564 0.66 0.798225
Target:  5'- aUUGGCGAucagcUGcgcaaacAGCGCCUGCcacgcaGCGACg -3'
miRNA:   3'- -AGCUGCUuu---ACu------UCGCGGACG------CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 13841 0.66 0.798225
Target:  5'- uUCGACGAc---GGGCGCC-GCGuCGAg -3'
miRNA:   3'- -AGCUGCUuuacUUCGCGGaCGC-GCUg -5'
17026 5' -53.2 NC_004333.2 + 982 0.66 0.798225
Target:  5'- gCGGCGAcuu---GUGCCucugcUGCGCGGCa -3'
miRNA:   3'- aGCUGCUuuacuuCGCGG-----ACGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 33399 0.66 0.788217
Target:  5'- aCGGCGAugccUGcGGCGCagcgaCUGCGCGcCg -3'
miRNA:   3'- aGCUGCUuu--ACuUCGCG-----GACGCGCuG- -5'
17026 5' -53.2 NC_004333.2 + 17572 0.66 0.788217
Target:  5'- aCGACGAccUGAucGGCaaGUC-GCGCGACu -3'
miRNA:   3'- aGCUGCUuuACU--UCG--CGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 21154 0.66 0.788217
Target:  5'- cUUGACGuGAUGguGCGCUUcGCGCuGCc -3'
miRNA:   3'- -AGCUGCuUUACuuCGCGGA-CGCGcUG- -5'
17026 5' -53.2 NC_004333.2 + 30753 0.66 0.788217
Target:  5'- gCGACGuuuUGAucgucAGCGCgucgugaccgcgCUGCGCGAg -3'
miRNA:   3'- aGCUGCuuuACU-----UCGCG------------GACGCGCUg -5'
17026 5' -53.2 NC_004333.2 + 27915 0.66 0.788217
Target:  5'- uUCGAUGAAGgagucGAuGUGCg-GCGCGAUg -3'
miRNA:   3'- -AGCUGCUUUa----CUuCGCGgaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 438 0.66 0.788217
Target:  5'- gUCGGcCGggGUGuacGAG-GCCacggcGCGCGACg -3'
miRNA:   3'- -AGCU-GCuuUAC---UUCgCGGa----CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 30691 0.66 0.778037
Target:  5'- gCGGuCGAGugcGAgcAGCGUgaGCGCGGCg -3'
miRNA:   3'- aGCU-GCUUua-CU--UCGCGgaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 8787 0.66 0.778037
Target:  5'- gUCGcCGGcAAUGccuuGCGCCgGCGUGAUg -3'
miRNA:   3'- -AGCuGCU-UUACuu--CGCGGaCGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 16006 0.66 0.778037
Target:  5'- cUCGGCGAGu--AAGCgcguggccgGCCUGC-CGACa -3'
miRNA:   3'- -AGCUGCUUuacUUCG---------CGGACGcGCUG- -5'
17026 5' -53.2 NC_004333.2 + 36839 0.66 0.778037
Target:  5'- aCGACGAAcc---GCGCCgccuucaucgcGCGCGACc -3'
miRNA:   3'- aGCUGCUUuacuuCGCGGa----------CGCGCUG- -5'
17026 5' -53.2 NC_004333.2 + 12667 0.66 0.778037
Target:  5'- aUCGACGGGucGAccGCGCCgaacaGCGACa -3'
miRNA:   3'- -AGCUGCUUuaCUu-CGCGGacg--CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 38583 0.66 0.775982
Target:  5'- uUCG-CGGGcaucGUGAAGCGCCagcuacagccggGCGCGcCg -3'
miRNA:   3'- -AGCuGCUU----UACUUCGCGGa-----------CGCGCuG- -5'
17026 5' -53.2 NC_004333.2 + 31075 0.66 0.767698
Target:  5'- aCGACGc----GAGCGCCUGCagguuCGGCg -3'
miRNA:   3'- aGCUGCuuuacUUCGCGGACGc----GCUG- -5'
17026 5' -53.2 NC_004333.2 + 26044 0.66 0.767698
Target:  5'- aUCGACGGugcgccgGAuuugccaguGGCGCCgcaGCgGCGGCg -3'
miRNA:   3'- -AGCUGCUuua----CU---------UCGCGGa--CG-CGCUG- -5'
17026 5' -53.2 NC_004333.2 + 41484 0.66 0.767698
Target:  5'- cUCGA-GAAGUcGGAGCGCgUGUuaGGCg -3'
miRNA:   3'- -AGCUgCUUUA-CUUCGCGgACGcgCUG- -5'
17026 5' -53.2 NC_004333.2 + 16925 0.66 0.767698
Target:  5'- cUGACGAAcaccGAgacGGCGCUgcgccGCGCGGCc -3'
miRNA:   3'- aGCUGCUUua--CU---UCGCGGa----CGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.