miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17033 5' -53.2 NC_004333.2 + 28544 0.66 0.834106
Target:  5'- uGACGGCcaGCGucggccgcgcucgccGCGcUCGCCGuGACCu -3'
miRNA:   3'- gUUGCCG--UGC---------------UGCaAGCGGCuUUGGc -5'
17033 5' -53.2 NC_004333.2 + 22771 0.66 0.830482
Target:  5'- --cCGGCACGcugcaggcGCGcUCGCCGGAugGCuCGa -3'
miRNA:   3'- guuGCCGUGC--------UGCaAGCGGCUU--UG-GC- -5'
17033 5' -53.2 NC_004333.2 + 11341 0.66 0.830482
Target:  5'- aUAGCGGC-CGGCGaUgGCCGuAGCgCGc -3'
miRNA:   3'- -GUUGCCGuGCUGCaAgCGGCuUUG-GC- -5'
17033 5' -53.2 NC_004333.2 + 4964 0.66 0.830482
Target:  5'- -cACGGCACGAgGUUCGuaGucauAGCUu -3'
miRNA:   3'- guUGCCGUGCUgCAAGCggCu---UUGGc -5'
17033 5' -53.2 NC_004333.2 + 46493 0.66 0.829571
Target:  5'- uCGACGauguacuGCACGACGgaagCGCUGuuuccGACCGc -3'
miRNA:   3'- -GUUGC-------CGUGCUGCaa--GCGGCu----UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 17883 0.66 0.824983
Target:  5'- ---aGGCGCGACGgcggccagcucgcCGUCGAAACuCGa -3'
miRNA:   3'- guugCCGUGCUGCaa-----------GCGGCUUUG-GC- -5'
17033 5' -53.2 NC_004333.2 + 30780 0.66 0.821276
Target:  5'- -cGCGGCgaccgucaugACGACGUUCGCCa------ -3'
miRNA:   3'- guUGCCG----------UGCUGCAAGCGGcuuuggc -5'
17033 5' -53.2 NC_004333.2 + 46289 0.66 0.821276
Target:  5'- aCAACuGGCACGAUa-UCGCCGGuuACUc -3'
miRNA:   3'- -GUUG-CCGUGCUGcaAGCGGCUu-UGGc -5'
17033 5' -53.2 NC_004333.2 + 10453 0.66 0.821276
Target:  5'- ---aGGCGCGGCaGcUUGCCGAcAUCGa -3'
miRNA:   3'- guugCCGUGCUG-CaAGCGGCUuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 39515 0.66 0.821276
Target:  5'- cCGACGGCACcgucacgagcaaGcCGggCGCCGc-GCCGa -3'
miRNA:   3'- -GUUGCCGUG------------CuGCaaGCGGCuuUGGC- -5'
17033 5' -53.2 NC_004333.2 + 43901 0.66 0.821276
Target:  5'- ---gGGCACGAUGUUgUGUCGA--CCGg -3'
miRNA:   3'- guugCCGUGCUGCAA-GCGGCUuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 22960 0.66 0.811865
Target:  5'- gAACGGCAgCGucGCGggCGUCGAcgUCGa -3'
miRNA:   3'- gUUGCCGU-GC--UGCaaGCGGCUuuGGC- -5'
17033 5' -53.2 NC_004333.2 + 31176 0.66 0.811865
Target:  5'- -cGCGGCgACGGCGUaUGCCGcGAGuuGc -3'
miRNA:   3'- guUGCCG-UGCUGCAaGCGGC-UUUggC- -5'
17033 5' -53.2 NC_004333.2 + 21895 0.66 0.811865
Target:  5'- uCGACGGCGCGGUGcgCGCCacauACUGc -3'
miRNA:   3'- -GUUGCCGUGCUGCaaGCGGcuu-UGGC- -5'
17033 5' -53.2 NC_004333.2 + 33169 0.66 0.811865
Target:  5'- -cGCGGCGuCGGCG-UCGgCGGcccgcuAACCGg -3'
miRNA:   3'- guUGCCGU-GCUGCaAGCgGCU------UUGGC- -5'
17033 5' -53.2 NC_004333.2 + 9949 0.66 0.802262
Target:  5'- gAACGGCGCGGCGcgcUUGCuCGAcuCgGg -3'
miRNA:   3'- gUUGCCGUGCUGCa--AGCG-GCUuuGgC- -5'
17033 5' -53.2 NC_004333.2 + 30011 0.66 0.802262
Target:  5'- -uGCGGCGCcGC--UCGUCGGGAUCGg -3'
miRNA:   3'- guUGCCGUGcUGcaAGCGGCUUUGGC- -5'
17033 5' -53.2 NC_004333.2 + 46233 0.66 0.792477
Target:  5'- aGGCGGCcCG-CG-UCGCCGGugcgGGCCa -3'
miRNA:   3'- gUUGCCGuGCuGCaAGCGGCU----UUGGc -5'
17033 5' -53.2 NC_004333.2 + 41586 0.66 0.792477
Target:  5'- gGGCGGCGCGcCGUggCGgCGAuGCgGg -3'
miRNA:   3'- gUUGCCGUGCuGCAa-GCgGCUuUGgC- -5'
17033 5' -53.2 NC_004333.2 + 9845 0.66 0.792477
Target:  5'- uCGGuCGGCACGcccucgagGCGcauUUCGCCGGucGCCGc -3'
miRNA:   3'- -GUU-GCCGUGC--------UGC---AAGCGGCUu-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.