miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17041 3' -60.9 NC_004333.2 + 17221 0.66 0.452597
Target:  5'- uCGCGCuugacGGCCGC--CGGCGuaucgCCGGa -3'
miRNA:   3'- -GCGCG-----UCGGCGcaGCCGCuaca-GGCC- -5'
17041 3' -60.9 NC_004333.2 + 29945 0.66 0.443192
Target:  5'- gCGUGCcGUCgGCGUCGuaGAUuUCCGGc -3'
miRNA:   3'- -GCGCGuCGG-CGCAGCcgCUAcAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 22870 0.66 0.443192
Target:  5'- uCGCgGCAGUCGC--CGGCGucgGcCCGGu -3'
miRNA:   3'- -GCG-CGUCGGCGcaGCCGCua-CaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 47364 0.66 0.443192
Target:  5'- aGUGCAGCUguucgguccuGCGcCGGCGA---CCGGc -3'
miRNA:   3'- gCGCGUCGG----------CGCaGCCGCUacaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 36435 0.66 0.443192
Target:  5'- aCGuCGguGCCG-GUCGGC--UG-CCGGa -3'
miRNA:   3'- -GC-GCguCGGCgCAGCCGcuACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 29376 0.66 0.442258
Target:  5'- aCGCGCccugcGGCCGCGcgauaagcgcgguUCaGCGAUGg-CGGg -3'
miRNA:   3'- -GCGCG-----UCGGCGC-------------AGcCGCUACagGCC- -5'
17041 3' -60.9 NC_004333.2 + 33291 0.66 0.433898
Target:  5'- gCGCGCGcGuuGCGUCGGCcgcaucGAgccaaCCGGc -3'
miRNA:   3'- -GCGCGU-CggCGCAGCCG------CUaca--GGCC- -5'
17041 3' -60.9 NC_004333.2 + 13126 0.66 0.433898
Target:  5'- uCGCG-AGCUGCGUCauGCuGAUG-CCGGc -3'
miRNA:   3'- -GCGCgUCGGCGCAGc-CG-CUACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 29871 0.66 0.433898
Target:  5'- gCGCGCGGuaGuCGUCGGCGAagcgcUGcgcgaUCGGg -3'
miRNA:   3'- -GCGCGUCggC-GCAGCCGCU-----ACa----GGCC- -5'
17041 3' -60.9 NC_004333.2 + 33872 0.66 0.433898
Target:  5'- uGCuGCAGCCGaGUCGGCcagcgacaGcgGUgCGGu -3'
miRNA:   3'- gCG-CGUCGGCgCAGCCG--------CuaCAgGCC- -5'
17041 3' -60.9 NC_004333.2 + 39021 0.66 0.433898
Target:  5'- gCGCGCAGCUGCGgUCGagcaggcaaagcGCGAcGUgCGu -3'
miRNA:   3'- -GCGCGUCGGCGC-AGC------------CGCUaCAgGCc -5'
17041 3' -60.9 NC_004333.2 + 46944 0.66 0.433898
Target:  5'- gCGCGCAGCCaaGgCGGCGcgcgCCGa -3'
miRNA:   3'- -GCGCGUCGGcgCaGCCGCuacaGGCc -5'
17041 3' -60.9 NC_004333.2 + 30626 0.66 0.433898
Target:  5'- uCGUGCAG-CGCuUCGGgGAUGUgCGc -3'
miRNA:   3'- -GCGCGUCgGCGcAGCCgCUACAgGCc -5'
17041 3' -60.9 NC_004333.2 + 23062 0.66 0.433898
Target:  5'- gCGCGCcGCCGUGcUCGcCG-UGcCCGGa -3'
miRNA:   3'- -GCGCGuCGGCGC-AGCcGCuACaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 34200 0.66 0.433898
Target:  5'- gCGCGCAGCuCGCGcgcacCGGCcg---CCGGc -3'
miRNA:   3'- -GCGCGUCG-GCGCa----GCCGcuacaGGCC- -5'
17041 3' -60.9 NC_004333.2 + 17604 0.66 0.433898
Target:  5'- --aGCGGUCGaUGUC-GCGGUGUUCGGc -3'
miRNA:   3'- gcgCGUCGGC-GCAGcCGCUACAGGCC- -5'
17041 3' -60.9 NC_004333.2 + 17008 0.66 0.430212
Target:  5'- gCGCGCcgucugGGCgGCGaugccaaggcgggCGGCGAUGcauucgCCGGg -3'
miRNA:   3'- -GCGCG------UCGgCGCa------------GCCGCUACa-----GGCC- -5'
17041 3' -60.9 NC_004333.2 + 42979 0.66 0.424718
Target:  5'- gGUGCcgacGCCGCGccugcaGGCGAUGUUCa- -3'
miRNA:   3'- gCGCGu---CGGCGCag----CCGCUACAGGcc -5'
17041 3' -60.9 NC_004333.2 + 21091 0.66 0.424718
Target:  5'- aCGUGCGGCuucacgaaCGcCGUCGGUcuGAUGUUCGc -3'
miRNA:   3'- -GCGCGUCG--------GC-GCAGCCG--CUACAGGCc -5'
17041 3' -60.9 NC_004333.2 + 29580 0.66 0.424718
Target:  5'- cCGCGCcuGCCGCGcCGGUcguuuguugcacGAacggGUUCGGa -3'
miRNA:   3'- -GCGCGu-CGGCGCaGCCG------------CUa---CAGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.