miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17058 5' -44.7 NC_004333.2 + 36513 0.65 0.999112
Target:  5'- aCGAAAUGAAGcgccugcGCGacuacuggcagcgcUACUucgacacguUCGCGCGCg -3'
miRNA:   3'- -GCUUUACUUU-------UGC--------------AUGGu--------AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 44907 0.66 0.998984
Target:  5'- --uGAUGAGcuGCGUcucgAUgCGUCGCGCGCg -3'
miRNA:   3'- gcuUUACUUu-UGCA----UG-GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 11609 0.66 0.998984
Target:  5'- ----cUGAAAcGCGccgGCCGucacuUCGCGCGCg -3'
miRNA:   3'- gcuuuACUUU-UGCa--UGGU-----AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 31525 0.66 0.998984
Target:  5'- cCGGGcaGGucgaaGUGCUGUCGCACGUa -3'
miRNA:   3'- -GCUUuaCUuuug-CAUGGUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 29934 0.66 0.998984
Target:  5'- gCGGAuuagcAGCGUGCCGUCgGCGuCGUa -3'
miRNA:   3'- -GCUUuacuuUUGCAUGGUAG-CGU-GCG- -5'
17058 5' -44.7 NC_004333.2 + 15217 0.66 0.998984
Target:  5'- cCGAAGUcGcAAAGC-UGCCcgacgCGCACGCc -3'
miRNA:   3'- -GCUUUA-C-UUUUGcAUGGua---GCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 33936 0.66 0.998984
Target:  5'- uCGAAA-GAGGcgcgcGCGcacGCCGUCGCAUGg -3'
miRNA:   3'- -GCUUUaCUUU-----UGCa--UGGUAGCGUGCg -5'
17058 5' -44.7 NC_004333.2 + 33349 0.66 0.998984
Target:  5'- aCGccGUGGucuGCGaaugACCugcUCGCGCGCg -3'
miRNA:   3'- -GCuuUACUuu-UGCa---UGGu--AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 8974 0.66 0.998962
Target:  5'- cCGAc--GGGAGCGcggGCCGUgcugccggugcagCGCGCGCa -3'
miRNA:   3'- -GCUuuaCUUUUGCa--UGGUA-------------GCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 30701 0.66 0.998736
Target:  5'- gCGAGcagcGUGAGcGCGgcgGCCuUCGCguuGCGCc -3'
miRNA:   3'- -GCUU----UACUUuUGCa--UGGuAGCG---UGCG- -5'
17058 5' -44.7 NC_004333.2 + 28925 0.66 0.998736
Target:  5'- -----cGGAuGCGUGCauguUCGCACGUc -3'
miRNA:   3'- gcuuuaCUUuUGCAUGgu--AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 26370 0.66 0.998736
Target:  5'- aGGAAUGccucGAACGcuuucagcUGCCAcUCGCGCGg -3'
miRNA:   3'- gCUUUACu---UUUGC--------AUGGU-AGCGUGCg -5'
17058 5' -44.7 NC_004333.2 + 13744 0.66 0.998736
Target:  5'- uGAAGUcGAGcGCGUAggaCGcCGCGCGCc -3'
miRNA:   3'- gCUUUA-CUUuUGCAUg--GUaGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 5499 0.66 0.998438
Target:  5'- cCGgcGUGGAGACGaucggcGCUGUUGCGgGCu -3'
miRNA:   3'- -GCuuUACUUUUGCa-----UGGUAGCGUgCG- -5'
17058 5' -44.7 NC_004333.2 + 15966 0.66 0.998082
Target:  5'- aGAGcucGgcGACGUGCuCAUCGCGCu- -3'
miRNA:   3'- gCUUua-CuuUUGCAUG-GUAGCGUGcg -5'
17058 5' -44.7 NC_004333.2 + 1103 0.66 0.998082
Target:  5'- gCGAAA-GAucGCGcucaCGUUGCGCGCa -3'
miRNA:   3'- -GCUUUaCUuuUGCaug-GUAGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 23141 0.66 0.998082
Target:  5'- gCGGAcUGGAcGAUGUugguGCCAUCGCcCGUc -3'
miRNA:   3'- -GCUUuACUU-UUGCA----UGGUAGCGuGCG- -5'
17058 5' -44.7 NC_004333.2 + 29338 0.66 0.998082
Target:  5'- ------aAGggUGUACCAgcccaugcgcugUCGCACGCg -3'
miRNA:   3'- gcuuuacUUuuGCAUGGU------------AGCGUGCG- -5'
17058 5' -44.7 NC_004333.2 + 26366 0.67 0.997661
Target:  5'- aCGu--UGAuGACGUcgcuGCCGUCGguCGUg -3'
miRNA:   3'- -GCuuuACUuUUGCA----UGGUAGCguGCG- -5'
17058 5' -44.7 NC_004333.2 + 34990 0.67 0.997521
Target:  5'- aGAGGUGucguaucaucugcCGUACCAUUGCcgguCGCg -3'
miRNA:   3'- gCUUUACuuuu---------GCAUGGUAGCGu---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.