Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17060 | 3' | -50.9 | NC_004333.2 | + | 34080 | 0.66 | 0.900004 |
Target: 5'- -aGCGucgaCGGCAUGaCGAUCGCgcUGCa -3' miRNA: 3'- aaCGCua--GCUGUGCaGCUAGCGa-AUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 17283 | 0.66 | 0.900004 |
Target: 5'- -cGCGcUCGACGCGuucaaccagUCGAUgCGCgagACg -3' miRNA: 3'- aaCGCuAGCUGUGC---------AGCUA-GCGaa-UG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 16012 | 0.66 | 0.900004 |
Target: 5'- cUGCGAcgagCGAgGCuUUGAUCGgUUGCa -3' miRNA: 3'- aACGCUa---GCUgUGcAGCUAGCgAAUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 32155 | 0.66 | 0.900004 |
Target: 5'- -gGCGAcugUCGGCAgGcCGGccacgCGCUUACu -3' miRNA: 3'- aaCGCU---AGCUGUgCaGCUa----GCGAAUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 23817 | 0.66 | 0.900004 |
Target: 5'- gUGCGGUC---AUGUCGAUCGCcucACg -3' miRNA: 3'- aACGCUAGcugUGCAGCUAGCGaa-UG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 3600 | 0.66 | 0.892645 |
Target: 5'- -gGCGAUCGuauuCGCccaGUCGggCGCcUGCg -3' miRNA: 3'- aaCGCUAGCu---GUG---CAGCuaGCGaAUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 6814 | 0.66 | 0.892645 |
Target: 5'- cUUGCGGUCgGGCGCGugcUCGAgCGCcacacgUACa -3' miRNA: 3'- -AACGCUAG-CUGUGC---AGCUaGCGa-----AUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 7485 | 0.66 | 0.892645 |
Target: 5'- -gGCGAUCGGguUGguguucuuugCGGUCGCgagUGCg -3' miRNA: 3'- aaCGCUAGCUguGCa---------GCUAGCGa--AUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 18085 | 0.66 | 0.892645 |
Target: 5'- -cGCGcAUCGACGCGuuccgUCGG-CGCUacgGCa -3' miRNA: 3'- aaCGC-UAGCUGUGC-----AGCUaGCGAa--UG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 4269 | 0.66 | 0.884996 |
Target: 5'- gUGCGcuaCGugGCGuUUGGUCGCgcagUGCg -3' miRNA: 3'- aACGCua-GCugUGC-AGCUAGCGa---AUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 36198 | 0.66 | 0.884996 |
Target: 5'- -cGCGAUaCGGC-CG-CGAUCGUcgACg -3' miRNA: 3'- aaCGCUA-GCUGuGCaGCUAGCGaaUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 17616 | 0.66 | 0.884996 |
Target: 5'- -cGCGGuguUCGGCugGcagaCGAUCGCgaagGCg -3' miRNA: 3'- aaCGCU---AGCUGugCa---GCUAGCGaa--UG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 28757 | 0.66 | 0.884996 |
Target: 5'- -cGCGAgCGcCGCGUCGAcCGCg--- -3' miRNA: 3'- aaCGCUaGCuGUGCAGCUaGCGaaug -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 23159 | 0.66 | 0.884996 |
Target: 5'- gUGCcAUCGcccguCACGUCGGUCGg-UGCg -3' miRNA: 3'- aACGcUAGCu----GUGCAGCUAGCgaAUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 26434 | 0.66 | 0.884996 |
Target: 5'- -gGCGGUUGAgCuCGUCGAacuUCGC-UGCg -3' miRNA: 3'- aaCGCUAGCU-GuGCAGCU---AGCGaAUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 15138 | 0.66 | 0.877064 |
Target: 5'- --aUGAUCGACuugGCGUCGGUUGagUUGCg -3' miRNA: 3'- aacGCUAGCUG---UGCAGCUAGCg-AAUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 46161 | 0.66 | 0.877064 |
Target: 5'- aUGCGGcCGugACGUCGGgcaucauccgCGCcgGCg -3' miRNA: 3'- aACGCUaGCugUGCAGCUa---------GCGaaUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 4634 | 0.66 | 0.876256 |
Target: 5'- aUGCGAUCaGGCGCGgucaucgUCGAgauacgccagaaUCGCUUugGCg -3' miRNA: 3'- aACGCUAG-CUGUGC-------AGCU------------AGCGAA--UG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 15284 | 0.66 | 0.872171 |
Target: 5'- cUGCGG-CGGCGCGgucagcaucagcacCGggCGCUUGCc -3' miRNA: 3'- aACGCUaGCUGUGCa-------------GCuaGCGAAUG- -5' |
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17060 | 3' | -50.9 | NC_004333.2 | + | 8160 | 0.66 | 0.868855 |
Target: 5'- -gGCGAcaggUCGGcCGCGUCcAUCGCgUACu -3' miRNA: 3'- aaCGCU----AGCU-GUGCAGcUAGCGaAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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