miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17084 5' -60.3 NC_004333.2 + 27616 0.66 0.478651
Target:  5'- uGCGcagauUCGCcCCGGCGCGgCacuugcgauCGACACGUc -3'
miRNA:   3'- -CGC-----AGUGcGGCCGCGUgG---------GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 42068 0.66 0.478651
Target:  5'- cGCG-CACcgacaggaaGCCuuGGCGCggucGCCCGcACugGCg -3'
miRNA:   3'- -CGCaGUG---------CGG--CCGCG----UGGGC-UGugCG- -5'
17084 5' -60.3 NC_004333.2 + 7704 0.66 0.478651
Target:  5'- uCGUCGCGCUguuccaGGUGCugCaGACGCa- -3'
miRNA:   3'- cGCAGUGCGG------CCGCGugGgCUGUGcg -5'
17084 5' -60.3 NC_004333.2 + 12253 0.66 0.478651
Target:  5'- aUGagACGCCGGaagaaGCgGCUCGGCGCGa -3'
miRNA:   3'- cGCagUGCGGCCg----CG-UGGGCUGUGCg -5'
17084 5' -60.3 NC_004333.2 + 38141 0.66 0.478651
Target:  5'- cGCGUUcgACGCCgacccGGC-CGCCgaucuUGGCACGCc -3'
miRNA:   3'- -CGCAG--UGCGG-----CCGcGUGG-----GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 20704 0.66 0.477672
Target:  5'- cCGUUgcgACGCUcGCGUcgaauugGCCCGACuGCGCg -3'
miRNA:   3'- cGCAG---UGCGGcCGCG-------UGGGCUG-UGCG- -5'
17084 5' -60.3 NC_004333.2 + 18223 0.66 0.477672
Target:  5'- ---aCGCGCCGGaaaucuaCGaCGCCgaCGGCACGCu -3'
miRNA:   3'- cgcaGUGCGGCC-------GC-GUGG--GCUGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 17052 0.66 0.468916
Target:  5'- gGCGUCAUGCucgCGGUGUuCCaGcCGCGCc -3'
miRNA:   3'- -CGCAGUGCG---GCCGCGuGGgCuGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 5533 0.66 0.468916
Target:  5'- -gGUCAUgccgugGCCGGCGacgGCuuGGCGCGa -3'
miRNA:   3'- cgCAGUG------CGGCCGCg--UGggCUGUGCg -5'
17084 5' -60.3 NC_004333.2 + 27358 0.66 0.468916
Target:  5'- gGUGUCAUggugcgguaGCCGuGgaaGUGCCCGGCGCGa -3'
miRNA:   3'- -CGCAGUG---------CGGC-Cg--CGUGGGCUGUGCg -5'
17084 5' -60.3 NC_004333.2 + 27718 0.66 0.468916
Target:  5'- gGUGUCAauguuCGCCGaCGCuguGCCCGugaauGCugGCa -3'
miRNA:   3'- -CGCAGU-----GCGGCcGCG---UGGGC-----UGugCG- -5'
17084 5' -60.3 NC_004333.2 + 13489 0.66 0.468916
Target:  5'- gGCGUUcgGCCGcGCGCACCCG-UAUu- -3'
miRNA:   3'- -CGCAGugCGGC-CGCGUGGGCuGUGcg -5'
17084 5' -60.3 NC_004333.2 + 11132 0.66 0.468916
Target:  5'- cCG-CACGcCCGGCgGUcgagaauucgACCCGgGCGCGCu -3'
miRNA:   3'- cGCaGUGC-GGCCG-CG----------UGGGC-UGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 16977 0.66 0.468916
Target:  5'- ---aCACGCgGGCGC-CCgGGCAC-Ca -3'
miRNA:   3'- cgcaGUGCGgCCGCGuGGgCUGUGcG- -5'
17084 5' -60.3 NC_004333.2 + 11900 0.66 0.468916
Target:  5'- gGCG-CAaGCUGGaGCGCgCCGuCGCGCu -3'
miRNA:   3'- -CGCaGUgCGGCCgCGUG-GGCuGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 23619 0.66 0.467948
Target:  5'- uGCGuUCGCGacagcuacgcagaUCGGCGgcUACCCGAaagGCGCg -3'
miRNA:   3'- -CGC-AGUGC-------------GGCCGC--GUGGGCUg--UGCG- -5'
17084 5' -60.3 NC_004333.2 + 15076 0.66 0.459283
Target:  5'- gGCGUCgGCGUCGGCG-GCCCGcuaAC-CGg -3'
miRNA:   3'- -CGCAG-UGCGGCCGCgUGGGC---UGuGCg -5'
17084 5' -60.3 NC_004333.2 + 16537 0.66 0.458326
Target:  5'- cGCGa-GCGgUGGCGCaacuGCCCGGCguccgucACGCu -3'
miRNA:   3'- -CGCagUGCgGCCGCG----UGGGCUG-------UGCG- -5'
17084 5' -60.3 NC_004333.2 + 31098 0.66 0.458326
Target:  5'- gGCGcCugGCCcgucagcGGCGCgaguugcuGCUCG-CGCGCg -3'
miRNA:   3'- -CGCaGugCGG-------CCGCG--------UGGGCuGUGCG- -5'
17084 5' -60.3 NC_004333.2 + 44849 0.66 0.456414
Target:  5'- cGCGagACGCUGaagaagaucgccgcGCGCgacaaccuGCCCGACuCGCu -3'
miRNA:   3'- -CGCagUGCGGC--------------CGCG--------UGGGCUGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.