miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17106 5' -58 NC_004333.2 + 19966 0.66 0.510386
Target:  5'- aCGGCGCGGauGGCCcaGAGCuGCUgaGCGCg- -3'
miRNA:   3'- -GCCGCGUC--CUGG--CUUGuCGA--CGUGaa -5'
17106 5' -58 NC_004333.2 + 6827 0.66 0.509332
Target:  5'- gCGGCacuccgGCGGGgcacucgucggcuACCG-GCGGCUGCGCa- -3'
miRNA:   3'- -GCCG------CGUCC-------------UGGCuUGUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 32468 0.66 0.507228
Target:  5'- aGGCGCGGG-CCGAcaccgagaaccccgAC-GCgGCGCUg -3'
miRNA:   3'- gCCGCGUCCuGGCU--------------UGuCGaCGUGAa -5'
17106 5' -58 NC_004333.2 + 30194 0.66 0.489494
Target:  5'- gGcGCGCAGGGCaucuucCAGUUGCGCg- -3'
miRNA:   3'- gC-CGCGUCCUGgcuu--GUCGACGUGaa -5'
17106 5' -58 NC_004333.2 + 15211 0.66 0.489494
Target:  5'- cCGGCaGCAGG-CCGGucagACGGCcGUACa- -3'
miRNA:   3'- -GCCG-CGUCCuGGCU----UGUCGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 24441 0.66 0.489494
Target:  5'- aGGCcaGCAGcgccagcaaGACCGGGCuguuGCUGUACUg -3'
miRNA:   3'- gCCG--CGUC---------CUGGCUUGu---CGACGUGAa -5'
17106 5' -58 NC_004333.2 + 23103 0.66 0.489494
Target:  5'- uCGGuUGCGucGGCUGAACGGCgGCACUg -3'
miRNA:   3'- -GCC-GCGUc-CUGGCUUGUCGaCGUGAa -5'
17106 5' -58 NC_004333.2 + 12455 0.66 0.479199
Target:  5'- uGGCGCGccGGGCgGGGCgcgGGCggGCGCUa -3'
miRNA:   3'- gCCGCGU--CCUGgCUUG---UCGa-CGUGAa -5'
17106 5' -58 NC_004333.2 + 45083 0.66 0.479199
Target:  5'- -cGCGCGGucgagcGGCCGGACAGC-GCGCc- -3'
miRNA:   3'- gcCGCGUC------CUGGCUUGUCGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 30741 0.66 0.476131
Target:  5'- gCGGCGCgaacggcuucaugaAGGuGCuCGAGCAGC-GCACg- -3'
miRNA:   3'- -GCCGCG--------------UCC-UG-GCUUGUCGaCGUGaa -5'
17106 5' -58 NC_004333.2 + 32409 0.66 0.469011
Target:  5'- uCGG-GCAGcGACCcGGCAGCcgUGCACg- -3'
miRNA:   3'- -GCCgCGUC-CUGGcUUGUCG--ACGUGaa -5'
17106 5' -58 NC_004333.2 + 362 0.66 0.469011
Target:  5'- uCGGCGCu---UUGAACAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGuccuGGCUUGUCGACGUgaa -5'
17106 5' -58 NC_004333.2 + 25971 0.66 0.469011
Target:  5'- -aGCGCAGGGCggCGAagcGCGGCgcuugGCGCUc -3'
miRNA:   3'- gcCGCGUCCUG--GCU---UGUCGa----CGUGAa -5'
17106 5' -58 NC_004333.2 + 9467 0.66 0.458936
Target:  5'- aGGCGCGGGugccgcaccgccGCCGAGCuGCUcgaGCUUc -3'
miRNA:   3'- gCCGCGUCC------------UGGCUUGuCGAcg-UGAA- -5'
17106 5' -58 NC_004333.2 + 1644 0.67 0.448976
Target:  5'- gCGGCGUAGccCUGAAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
17106 5' -58 NC_004333.2 + 16734 0.67 0.439138
Target:  5'- gCGGUGCAGcACCGGGCAggucgaaguGCUGuCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGU---------CGAC-GUGaa -5'
17106 5' -58 NC_004333.2 + 38098 0.67 0.439138
Target:  5'- gGGCGcCAGGuAUCGAACGGgUcggcGCACUg -3'
miRNA:   3'- gCCGC-GUCC-UGGCUUGUCgA----CGUGAa -5'
17106 5' -58 NC_004333.2 + 43462 0.67 0.419836
Target:  5'- gCGGCuGCGGGACC--AUAGCgauUGCGCg- -3'
miRNA:   3'- -GCCG-CGUCCUGGcuUGUCG---ACGUGaa -5'
17106 5' -58 NC_004333.2 + 20676 0.67 0.41038
Target:  5'- aGGCGCAcGGgaugacGCCGGAUGGCgUGUACg- -3'
miRNA:   3'- gCCGCGU-CC------UGGCUUGUCG-ACGUGaa -5'
17106 5' -58 NC_004333.2 + 39757 0.67 0.41038
Target:  5'- uGGCGCAGGcagGCCGAcCAGgaaGCGCg- -3'
miRNA:   3'- gCCGCGUCC---UGGCUuGUCga-CGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.