miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17113 5' -66 NC_004333.2 + 8542 0.66 0.253089
Target:  5'- uCGCCGUCgCGagguacgaaaaUCCUGugggacgugGugGCCGGGCa -3'
miRNA:   3'- -GCGGCGG-GC-----------GGGGCua-------CugCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 22629 0.66 0.253089
Target:  5'- gCGCCuGUgCGCUggaUGAUGACGCCcaGGCa -3'
miRNA:   3'- -GCGG-CGgGCGGg--GCUACUGCGGc-CCG- -5'
17113 5' -66 NC_004333.2 + 40159 0.66 0.253089
Target:  5'- gCGUCGUCCaCUCCGAUGcggaaGCaUGGGCg -3'
miRNA:   3'- -GCGGCGGGcGGGGCUACug---CG-GCCCG- -5'
17113 5' -66 NC_004333.2 + 26158 0.66 0.252483
Target:  5'- aGUCGCCUGCCcgaauCCGGaaGCGCCGccgcugcGGCg -3'
miRNA:   3'- gCGGCGGGCGG-----GGCUacUGCGGC-------CCG- -5'
17113 5' -66 NC_004333.2 + 38149 0.66 0.247075
Target:  5'- aCGCCGaCCCgGCCgCCGAucuUGgcACGCCGcucgcaauGGCc -3'
miRNA:   3'- -GCGGC-GGG-CGG-GGCU---AC--UGCGGC--------CCG- -5'
17113 5' -66 NC_004333.2 + 22207 0.66 0.247075
Target:  5'- uGCgGCCUG-CUCGAUGcCGagaCGGGCc -3'
miRNA:   3'- gCGgCGGGCgGGGCUACuGCg--GCCCG- -5'
17113 5' -66 NC_004333.2 + 33439 0.66 0.247075
Target:  5'- aGCCGCgaGUCCgGcagcauUGgcagcggcGCGCCGGGCg -3'
miRNA:   3'- gCGGCGggCGGGgCu-----AC--------UGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 31238 0.66 0.247075
Target:  5'- gCGCCGUCUgggcggcgauGCCaaggcgggcggCGAUGcauuCGCCGGGCu -3'
miRNA:   3'- -GCGGCGGG----------CGGg----------GCUACu---GCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 16644 0.66 0.241179
Target:  5'- aGuuGUCCggcauGCCUuucgacagcgUGAcgGACGCCGGGCa -3'
miRNA:   3'- gCggCGGG-----CGGG----------GCUa-CUGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 25181 0.66 0.241179
Target:  5'- uGCCGCCgCGUCUCGAacuCGCUGcGCg -3'
miRNA:   3'- gCGGCGG-GCGGGGCUacuGCGGCcCG- -5'
17113 5' -66 NC_004333.2 + 38230 0.66 0.241179
Target:  5'- aGCgGCgUGCCaaGAUcGGCgGCCGGGUc -3'
miRNA:   3'- gCGgCGgGCGGggCUA-CUG-CGGCCCG- -5'
17113 5' -66 NC_004333.2 + 30149 0.66 0.241179
Target:  5'- gGCCG-CCGCCUuuCGuguUGuACGCCgaGGGCa -3'
miRNA:   3'- gCGGCgGGCGGG--GCu--AC-UGCGG--CCCG- -5'
17113 5' -66 NC_004333.2 + 20554 0.66 0.235401
Target:  5'- gGCCGCgCCGCUgaUCGucgGcGCGUCGGGUc -3'
miRNA:   3'- gCGGCG-GGCGG--GGCua-C-UGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 47147 0.66 0.235401
Target:  5'- uCG-CGUUCGuCCCCGAugcgcaucUGACGCCGGa- -3'
miRNA:   3'- -GCgGCGGGC-GGGGCU--------ACUGCGGCCcg -5'
17113 5' -66 NC_004333.2 + 22255 0.66 0.22974
Target:  5'- aGCCGCCgaacCGCCgCCGGc--CGCCGccGGCg -3'
miRNA:   3'- gCGGCGG----GCGG-GGCUacuGCGGC--CCG- -5'
17113 5' -66 NC_004333.2 + 41895 0.66 0.224194
Target:  5'- uCGCgGCCgGgCgCCGucGUGcCGUCGGGCa -3'
miRNA:   3'- -GCGgCGGgCgG-GGC--UACuGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 39174 0.66 0.224194
Target:  5'- uGCCGCCCGUgCUGcgcGCGCUGcaccGGCa -3'
miRNA:   3'- gCGGCGGGCGgGGCuacUGCGGC----CCG- -5'
17113 5' -66 NC_004333.2 + 28924 0.66 0.224194
Target:  5'- uGCCGUCgGUgCguaGcgGGCGCCGaGGCa -3'
miRNA:   3'- gCGGCGGgCGgGg--CuaCUGCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 38690 0.66 0.223646
Target:  5'- gGCCGCCgCGCugaaauuCCCGcaGcCGCCGGcGCu -3'
miRNA:   3'- gCGGCGG-GCG-------GGGCuaCuGCGGCC-CG- -5'
17113 5' -66 NC_004333.2 + 22943 0.66 0.218763
Target:  5'- gCGCCaGUacgaUCGCgCCGAU--CGCCGGGCc -3'
miRNA:   3'- -GCGG-CG----GGCGgGGCUAcuGCGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.