miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17171 5' -59.6 NC_004333.2 + 17736 0.66 0.452494
Target:  5'- uGGCcgacuccagGUGGUGCGCaagcauucaGCCGgCGCCg -3'
miRNA:   3'- uCCGucaua----CACCGCGCG---------UGGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 15176 0.66 0.446678
Target:  5'- cGGCAGUGcGUaGGuCGCGUucgcaauCCGCacgGCCg -3'
miRNA:   3'- uCCGUCAUaCA-CC-GCGCGu------GGCG---CGG- -5'
17171 5' -59.6 NC_004333.2 + 48177 0.66 0.446678
Target:  5'- cGGCGcg--GUGcGCGCGCccgguugccGCCuGCGCCu -3'
miRNA:   3'- uCCGUcauaCAC-CGCGCG---------UGG-CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 8863 0.66 0.437078
Target:  5'- aAGGUAucgcGgcUGcGGCGCGguuaGCCGCGCa -3'
miRNA:   3'- -UCCGU----CauACaCCGCGCg---UGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 45270 0.66 0.437078
Target:  5'- cGGGCuuc--GUGGCGCGgacagcugcCGCUGCGCa -3'
miRNA:   3'- -UCCGucauaCACCGCGC---------GUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 13449 0.66 0.427597
Target:  5'- uGGaugacgGUcGUGCGCACCGCGUCg -3'
miRNA:   3'- uCCgucauaCAcCGCGCGUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 3198 0.66 0.427597
Target:  5'- gAGGcCGGUGaGccGGCccgGCGCGCCGCccGCCc -3'
miRNA:   3'- -UCC-GUCAUaCa-CCG---CGCGUGGCG--CGG- -5'
17171 5' -59.6 NC_004333.2 + 36082 0.66 0.427597
Target:  5'- uGGCcc-GUGacGCgGCGCugCGCGCCa -3'
miRNA:   3'- uCCGucaUACacCG-CGCGugGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 20722 0.66 0.427597
Target:  5'- -uGCGGUgAUGacGGCGCGCG-CGCuGCCg -3'
miRNA:   3'- ucCGUCA-UACa-CCGCGCGUgGCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 41647 0.66 0.427597
Target:  5'- cAGGCAGUcaacgaaUGGCGCGUugaaGCCG-GUCg -3'
miRNA:   3'- -UCCGUCAuac----ACCGCGCG----UGGCgCGG- -5'
17171 5' -59.6 NC_004333.2 + 11713 0.66 0.41824
Target:  5'- cGGGCGGcGUGcUGGCGUcCugCGCGauguCCg -3'
miRNA:   3'- -UCCGUCaUAC-ACCGCGcGugGCGC----GG- -5'
17171 5' -59.6 NC_004333.2 + 9290 0.67 0.373382
Target:  5'- cGGCGcgAUGgaugcgaagucGGUGCGCACCGCGaUCg -3'
miRNA:   3'- uCCGUcaUACa----------CCGCGCGUGGCGC-GG- -5'
17171 5' -59.6 NC_004333.2 + 676 0.67 0.373382
Target:  5'- cGGUAGUGcccgugcucgGUGaGCGCG-AUCGUGCCg -3'
miRNA:   3'- uCCGUCAUa---------CAC-CGCGCgUGGCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 247 0.67 0.36908
Target:  5'- cGGGCAGUGgacucgcgccaGGCGCcgaucguGUGCuCGCGCCg -3'
miRNA:   3'- -UCCGUCAUaca--------CCGCG-------CGUG-GCGCGG- -5'
17171 5' -59.6 NC_004333.2 + 9466 0.67 0.364811
Target:  5'- cAGGCGcg----GGUGcCGCACCGcCGCCg -3'
miRNA:   3'- -UCCGUcauacaCCGC-GCGUGGC-GCGG- -5'
17171 5' -59.6 NC_004333.2 + 41432 0.67 0.364811
Target:  5'- -uGCGGUcg--GGCGCGUGCUcgaGCGCCa -3'
miRNA:   3'- ucCGUCAuacaCCGCGCGUGG---CGCGG- -5'
17171 5' -59.6 NC_004333.2 + 30381 0.67 0.356377
Target:  5'- uGGCGGgugGUGUcgcaGGCGCG-ACgGCgGCCa -3'
miRNA:   3'- uCCGUCa--UACA----CCGCGCgUGgCG-CGG- -5'
17171 5' -59.6 NC_004333.2 + 45205 0.67 0.356377
Target:  5'- cGGGCGacgacagGUaGGCGCGauCGCCGCGCa -3'
miRNA:   3'- -UCCGUcaua---CA-CCGCGC--GUGGCGCGg -5'
17171 5' -59.6 NC_004333.2 + 3640 0.67 0.356377
Target:  5'- uGGcGCAcUAUGUGGUcggccgacGCGCugCGCGgCa -3'
miRNA:   3'- -UC-CGUcAUACACCG--------CGCGugGCGCgG- -5'
17171 5' -59.6 NC_004333.2 + 20806 0.68 0.348081
Target:  5'- cGGCG--AUGUccGGCaGCGCG-CGCGCCg -3'
miRNA:   3'- uCCGUcaUACA--CCG-CGCGUgGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.