miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17202 3' -53.9 NC_004333.2 + 47284 0.66 0.760694
Target:  5'- gAAAGuAGCGC--GCCCG-UCGCgGCGAc -3'
miRNA:   3'- -UUUC-UUGUGguUGGGCuAGCGgCGCU- -5'
17202 3' -53.9 NC_004333.2 + 18987 0.66 0.760694
Target:  5'- --cGGGgGCCAuaGCUCGAUCGCCacaaacagGCGGc -3'
miRNA:   3'- uuuCUUgUGGU--UGGGCUAGCGG--------CGCU- -5'
17202 3' -53.9 NC_004333.2 + 40009 0.66 0.760694
Target:  5'- --cGAGCGCUuGCUCGAUCGCuuCGCc- -3'
miRNA:   3'- uuuCUUGUGGuUGGGCUAGCG--GCGcu -5'
17202 3' -53.9 NC_004333.2 + 38873 0.66 0.756485
Target:  5'- --cGAACGCC-GCCCGuccgcgcacccgCGCCGCu- -3'
miRNA:   3'- uuuCUUGUGGuUGGGCua----------GCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 26622 0.66 0.750131
Target:  5'- cGAAGAccgGCGCgGGCuCCGugcaguUCGCCGCa- -3'
miRNA:   3'- -UUUCU---UGUGgUUG-GGCu-----AGCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 2995 0.66 0.750131
Target:  5'- -uAGAcgcuCGCCGGCgCGucCGCCGCGAc -3'
miRNA:   3'- uuUCUu---GUGGUUGgGCuaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 24071 0.66 0.750131
Target:  5'- ---uAGCACUugcCCCGAUCGCCGaacauCGAg -3'
miRNA:   3'- uuucUUGUGGuu-GGGCUAGCGGC-----GCU- -5'
17202 3' -53.9 NC_004333.2 + 6965 0.66 0.750131
Target:  5'- aAAAG-ACGCC-GCU--GUCGCCGCGAu -3'
miRNA:   3'- -UUUCuUGUGGuUGGgcUAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 41780 0.66 0.750131
Target:  5'- --uGAucGCGCCGugccGCCCGAagUUGCCGCc- -3'
miRNA:   3'- uuuCU--UGUGGU----UGGGCU--AGCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 30548 0.66 0.743733
Target:  5'- --cGAGCGCCuuCgCGAUCGucugccagccgaacaCCGCGAc -3'
miRNA:   3'- uuuCUUGUGGuuGgGCUAGC---------------GGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 27815 0.66 0.739443
Target:  5'- --cGGGCucggcgGCCGACCaGAUucgCGCCGCGAu -3'
miRNA:   3'- uuuCUUG------UGGUUGGgCUA---GCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 31552 0.66 0.739443
Target:  5'- cGAGAACGCCGACaaagCGAUCGacaagcagauUCGCGc -3'
miRNA:   3'- uUUCUUGUGGUUGg---GCUAGC----------GGCGCu -5'
17202 3' -53.9 NC_004333.2 + 44827 0.66 0.739443
Target:  5'- cGAGGACAUgGACgaCGcUgGCCGCGAg -3'
miRNA:   3'- uUUCUUGUGgUUGg-GCuAgCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 1156 0.66 0.739443
Target:  5'- ----cACugCAuAUCCGAUCGCgGCGGc -3'
miRNA:   3'- uuucuUGugGU-UGGGCUAGCGgCGCU- -5'
17202 3' -53.9 NC_004333.2 + 32907 0.66 0.739443
Target:  5'- --uGAACuCCGAuCCCGcgacggUGCCGCGAc -3'
miRNA:   3'- uuuCUUGuGGUU-GGGCua----GCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 32938 0.66 0.738368
Target:  5'- uGAAGGGCuggcgcaacaucgACCGACUCGAgcagGCCGCGc -3'
miRNA:   3'- -UUUCUUG-------------UGGUUGGGCUag--CGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 5457 0.66 0.736214
Target:  5'- --cGAACAggucaacgccggcuUCAACCCGAUCGaCC-CGAa -3'
miRNA:   3'- uuuCUUGU--------------GGUUGGGCUAGC-GGcGCU- -5'
17202 3' -53.9 NC_004333.2 + 41527 0.66 0.728641
Target:  5'- aGAAGcAACACCGGCacauCGucagCGUCGCGAu -3'
miRNA:   3'- -UUUC-UUGUGGUUGg---GCua--GCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 31319 0.66 0.728641
Target:  5'- --cGAACACCGAgaCGGcgcugCGCCGCGc -3'
miRNA:   3'- uuuCUUGUGGUUggGCUa----GCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 18682 0.66 0.728641
Target:  5'- gAAAGggUugCcGCCCGcgCcuGCCGCGc -3'
miRNA:   3'- -UUUCuuGugGuUGGGCuaG--CGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.