miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 5' -54 NC_004333.2 + 38521 0.66 0.768192
Target:  5'- cGCGuCGCGCcacggaucgacaaagUUCGACGCGgCAagCGUc -3'
miRNA:   3'- -UGCuGCGCG---------------AAGUUGCGCgGUaaGCA- -5'
17204 5' -54 NC_004333.2 + 13704 0.66 0.764047
Target:  5'- gACGACGUGaCgaacgaUAGCGCGuCCAUgcUCGUg -3'
miRNA:   3'- -UGCUGCGC-Gaa----GUUGCGC-GGUA--AGCA- -5'
17204 5' -54 NC_004333.2 + 20211 0.66 0.764047
Target:  5'- cGCGGCucGCGCuUUCGugGCGgCGaUCGa -3'
miRNA:   3'- -UGCUG--CGCG-AAGUugCGCgGUaAGCa -5'
17204 5' -54 NC_004333.2 + 28126 0.66 0.764047
Target:  5'- aACGcGCGCGUUUCcguacuGCGCGCCGc-CGa -3'
miRNA:   3'- -UGC-UGCGCGAAGu-----UGCGCGGUaaGCa -5'
17204 5' -54 NC_004333.2 + 45317 0.66 0.764047
Target:  5'- cACG-CGCGCUUCGAUGCcggaCAggUCGg -3'
miRNA:   3'- -UGCuGCGCGAAGUUGCGcg--GUa-AGCa -5'
17204 5' -54 NC_004333.2 + 46920 0.66 0.764047
Target:  5'- cACGGCGuCGaugagCAGCuuGUGCCGUUCGa -3'
miRNA:   3'- -UGCUGC-GCgaa--GUUG--CGCGGUAAGCa -5'
17204 5' -54 NC_004333.2 + 11925 0.66 0.753589
Target:  5'- aGCGGCGCGCgcgcCAuuacGCGCGCUccaggcggUCGa -3'
miRNA:   3'- -UGCUGCGCGaa--GU----UGCGCGGua------AGCa -5'
17204 5' -54 NC_004333.2 + 36088 0.66 0.753589
Target:  5'- gUGACGCgGCgcu-GCGCGCCAgccaCGUa -3'
miRNA:   3'- uGCUGCG-CGaaguUGCGCGGUaa--GCA- -5'
17204 5' -54 NC_004333.2 + 6701 0.66 0.753589
Target:  5'- uGCGGgGCGCauuggCGACGaGCCAUgCGUg -3'
miRNA:   3'- -UGCUgCGCGaa---GUUGCgCGGUAaGCA- -5'
17204 5' -54 NC_004333.2 + 37529 0.66 0.753589
Target:  5'- gGCGA-GCGCcggaaugUCG--GCGCCGUUCGUc -3'
miRNA:   3'- -UGCUgCGCGa------AGUugCGCGGUAAGCA- -5'
17204 5' -54 NC_004333.2 + 9143 0.66 0.750426
Target:  5'- cACGuCGCGCUUugccugcucgaccgCAgcuGCGCGCUugcGUUCGUu -3'
miRNA:   3'- -UGCuGCGCGAA--------------GU---UGCGCGG---UAAGCA- -5'
17204 5' -54 NC_004333.2 + 3621 0.66 0.743002
Target:  5'- cCGACGCGCU---GCGCGgCAccgCGUu -3'
miRNA:   3'- uGCUGCGCGAaguUGCGCgGUaa-GCA- -5'
17204 5' -54 NC_004333.2 + 31238 0.66 0.743002
Target:  5'- gACGGCcGCGCggCGcaGCGCCGUcUCGg -3'
miRNA:   3'- -UGCUG-CGCGaaGUugCGCGGUA-AGCa -5'
17204 5' -54 NC_004333.2 + 42082 0.66 0.743002
Target:  5'- gGCcGCGCGCUUC-ACGCGCac--CGa -3'
miRNA:   3'- -UGcUGCGCGAAGuUGCGCGguaaGCa -5'
17204 5' -54 NC_004333.2 + 47526 0.66 0.743002
Target:  5'- cCGGCGCGUUgcuagUCGAUGCGUCGaaCGg -3'
miRNA:   3'- uGCUGCGCGA-----AGUUGCGCGGUaaGCa -5'
17204 5' -54 NC_004333.2 + 27909 0.66 0.741937
Target:  5'- aGCGACGUGCUgaaAGCGaucugcaCGCCGgcuggcUUCGUg -3'
miRNA:   3'- -UGCUGCGCGAag-UUGC-------GCGGU------AAGCA- -5'
17204 5' -54 NC_004333.2 + 18507 0.66 0.741937
Target:  5'- uUGaACGCGCUcgcggugUCGACGCcGCCGaUCGc -3'
miRNA:   3'- uGC-UGCGCGA-------AGUUGCG-CGGUaAGCa -5'
17204 5' -54 NC_004333.2 + 27737 0.66 0.736593
Target:  5'- cGCGGCGCGaaucuggUCGGCcgccgagcccgucagGCGCaCGUUCGUc -3'
miRNA:   3'- -UGCUGCGCga-----AGUUG---------------CGCG-GUAAGCA- -5'
17204 5' -54 NC_004333.2 + 26958 0.66 0.732299
Target:  5'- aGCGAC-UGC-UCAAUcacgGCGUCAUUCGUg -3'
miRNA:   3'- -UGCUGcGCGaAGUUG----CGCGGUAAGCA- -5'
17204 5' -54 NC_004333.2 + 20757 0.66 0.732299
Target:  5'- cCGACGCgGCU---GCGCGCCugaacgUCGa -3'
miRNA:   3'- uGCUGCG-CGAaguUGCGCGGua----AGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.