miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17205 3' -63.6 NC_004333.2 + 27465 0.66 0.329661
Target:  5'- --gGCaaacaUGACGGCACGGCcgucGCGCCgGg -3'
miRNA:   3'- cgaCGg----GCUGCCGUGCUGc---CGCGGgC- -5'
17205 3' -63.6 NC_004333.2 + 40104 0.66 0.329661
Target:  5'- uGCgGCCaaGGCGGCAUGAUGGCacGCUUc -3'
miRNA:   3'- -CGaCGGg-CUGCCGUGCUGCCG--CGGGc -5'
17205 3' -63.6 NC_004333.2 + 22461 0.66 0.329661
Target:  5'- cCUGCCCGA-GGCuCGugaacAUGGUGUCCa -3'
miRNA:   3'- cGACGGGCUgCCGuGC-----UGCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 13824 0.66 0.329661
Target:  5'- --cGCagCGACGGCgacgguucgACGACgGGCGCCgCGu -3'
miRNA:   3'- cgaCGg-GCUGCCG---------UGCUG-CCGCGG-GC- -5'
17205 3' -63.6 NC_004333.2 + 38460 0.66 0.329661
Target:  5'- -gUGgCCGGCGuCACGcCGGCGCacCCGa -3'
miRNA:   3'- cgACgGGCUGCcGUGCuGCCGCG--GGC- -5'
17205 3' -63.6 NC_004333.2 + 32822 0.66 0.329661
Target:  5'- -aUGgCCGGCGGCAgCGACcuGCGCgUGa -3'
miRNA:   3'- cgACgGGCUGCCGU-GCUGc-CGCGgGC- -5'
17205 3' -63.6 NC_004333.2 + 41817 0.66 0.329661
Target:  5'- --aGCCCGGC-GCGCGA-GuCGCCCGc -3'
miRNA:   3'- cgaCGGGCUGcCGUGCUgCcGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 33433 0.66 0.322133
Target:  5'- gGCaGCa-GGCGuucCACGACGGCGCgCCGu -3'
miRNA:   3'- -CGaCGggCUGCc--GUGCUGCCGCG-GGC- -5'
17205 3' -63.6 NC_004333.2 + 30946 0.66 0.322133
Target:  5'- --cGUCCGGCGaUACGcCGGCGgCCGu -3'
miRNA:   3'- cgaCGGGCUGCcGUGCuGCCGCgGGC- -5'
17205 3' -63.6 NC_004333.2 + 31228 0.66 0.322133
Target:  5'- uGCcgGUCgCGACGGC-CGcGCGGCGCagcgCCGu -3'
miRNA:   3'- -CGa-CGG-GCUGCCGuGC-UGCCGCG----GGC- -5'
17205 3' -63.6 NC_004333.2 + 27813 0.66 0.322133
Target:  5'- --gGCUCGGCGGC-CGACcagauucGCGCCgCGa -3'
miRNA:   3'- cgaCGGGCUGCCGuGCUGc------CGCGG-GC- -5'
17205 3' -63.6 NC_004333.2 + 11798 0.66 0.322133
Target:  5'- gGCUGCCgGACaucgcGCAgGACGccagcacgcCGCCCGg -3'
miRNA:   3'- -CGACGGgCUGc----CGUgCUGCc--------GCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 45543 0.66 0.322133
Target:  5'- cCUGCUCgGGCGGCAgGugGaCGCCg- -3'
miRNA:   3'- cGACGGG-CUGCCGUgCugCcGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 11167 0.66 0.321388
Target:  5'- cGCUGUUCGuCGcGCACGAUcauucccggaaugGGCcgcacGCCCGg -3'
miRNA:   3'- -CGACGGGCuGC-CGUGCUG-------------CCG-----CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 19999 0.66 0.3199
Target:  5'- cGCcGCCCGGCGcGCucgucgucgaugauGCgGACGGCGCg-- -3'
miRNA:   3'- -CGaCGGGCUGC-CG--------------UG-CUGCCGCGggc -5'
17205 3' -63.6 NC_004333.2 + 45246 0.66 0.314735
Target:  5'- cCUGUCCGGCaucgaagcGCGCG-UGGCGCCUu -3'
miRNA:   3'- cGACGGGCUGc-------CGUGCuGCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 19823 0.66 0.314735
Target:  5'- aGCgGCCgaucgcgucguUGACGGCA--GCGGCGCCg- -3'
miRNA:   3'- -CGaCGG-----------GCUGCCGUgcUGCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 20283 0.66 0.314735
Target:  5'- cGCcGCCaCGAaaGCGCGAgCcGCGCCCa -3'
miRNA:   3'- -CGaCGG-GCUgcCGUGCU-GcCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 10016 0.66 0.314735
Target:  5'- uGCgGUUCGACGGCaaacaccuGCG-CGGCGaCCUGc -3'
miRNA:   3'- -CGaCGGGCUGCCG--------UGCuGCCGC-GGGC- -5'
17205 3' -63.6 NC_004333.2 + 34184 0.66 0.314735
Target:  5'- -aUGCCC--UGGUACGAUGcgacugguacuGCGCCCGu -3'
miRNA:   3'- cgACGGGcuGCCGUGCUGC-----------CGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.