miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17206 5' -56.8 NC_004333.2 + 32309 0.66 0.593146
Target:  5'- gUGCGUCAGcagGUCGGUcacgagcgcguGCACGGCu-- -3'
miRNA:   3'- -ACGCGGUCaa-CGGCCA-----------CGUGCUGuac -5'
17206 5' -56.8 NC_004333.2 + 40942 0.66 0.593146
Target:  5'- cGaCGCCAca-GUCGGUcGCACGGCAg- -3'
miRNA:   3'- aC-GCGGUcaaCGGCCA-CGUGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 40852 0.66 0.593146
Target:  5'- cGCGCCuucuGGUcGCCGGcgauggucGCGCGACu-- -3'
miRNA:   3'- aCGCGG----UCAaCGGCCa-------CGUGCUGuac -5'
17206 5' -56.8 NC_004333.2 + 5037 0.66 0.582119
Target:  5'- gGCgGCCAGgcgGCCGGcuguugGC-CGACGUc -3'
miRNA:   3'- aCG-CGGUCaa-CGGCCa-----CGuGCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 234 0.66 0.582119
Target:  5'- cGCGCCAGgcGCCGaucguGUGCucgcgccgaaucACGACu-- -3'
miRNA:   3'- aCGCGGUCaaCGGC-----CACG------------UGCUGuac -5'
17206 5' -56.8 NC_004333.2 + 45090 0.66 0.582119
Target:  5'- aGCGCCacgcgcggucgAGcgGCCGGacaGCGCGcCGUGg -3'
miRNA:   3'- aCGCGG-----------UCaaCGGCCa--CGUGCuGUAC- -5'
17206 5' -56.8 NC_004333.2 + 2005 0.66 0.5602
Target:  5'- cGuCGCCGGUgcgggccaGCUGGUGCagACG-CGUGg -3'
miRNA:   3'- aC-GCGGUCAa-------CGGCCACG--UGCuGUAC- -5'
17206 5' -56.8 NC_004333.2 + 9056 0.66 0.5602
Target:  5'- cGCGUCGGUcGCCGccgcGCACGGCc-- -3'
miRNA:   3'- aCGCGGUCAaCGGCca--CGUGCUGuac -5'
17206 5' -56.8 NC_004333.2 + 9228 0.66 0.5602
Target:  5'- aGCGCgCAGcUG-CGGUcgagcaggcaaaGCGCGACGUGc -3'
miRNA:   3'- aCGCG-GUCaACgGCCA------------CGUGCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 31302 0.66 0.549325
Target:  5'- cUGCGCCGcGcgGCCGucGCGcCGGCAUGa -3'
miRNA:   3'- -ACGCGGU-CaaCGGCcaCGU-GCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 38372 0.66 0.549325
Target:  5'- cGCGCUgucgcgUGUCgGGUGCGcCGGCGUGa -3'
miRNA:   3'- aCGCGGuca---ACGG-CCACGU-GCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 45208 0.66 0.546074
Target:  5'- cGCGCCAcgaagcccggccacGUgcuUGUCGGUGC-CGACcUGu -3'
miRNA:   3'- aCGCGGU--------------CA---ACGGCCACGuGCUGuAC- -5'
17206 5' -56.8 NC_004333.2 + 26051 0.66 0.538515
Target:  5'- gUGCGCCGGauUUGCCaGUGgCGCcGCAg- -3'
miRNA:   3'- -ACGCGGUC--AACGGcCAC-GUGcUGUac -5'
17206 5' -56.8 NC_004333.2 + 28807 0.66 0.538515
Target:  5'- cGCG-CAGUUGCUGGccgaccUGCguuucuACGGCAUGc -3'
miRNA:   3'- aCGCgGUCAACGGCC------ACG------UGCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 11980 0.66 0.538515
Target:  5'- cGCGCCGcugcgcaUGCCGGgccGCgACGACAa- -3'
miRNA:   3'- aCGCGGUca-----ACGGCCa--CG-UGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 39014 0.67 0.52778
Target:  5'- aGCGgCGaUUGCCGGU-CGCGuCGUGg -3'
miRNA:   3'- aCGCgGUcAACGGCCAcGUGCuGUAC- -5'
17206 5' -56.8 NC_004333.2 + 11808 0.67 0.52778
Target:  5'- gGUGCCGGUcggcUGCCGGacaucgcGCAgGACGc- -3'
miRNA:   3'- aCGCGGUCA----ACGGCCa------CGUgCUGUac -5'
17206 5' -56.8 NC_004333.2 + 6998 0.67 0.496084
Target:  5'- gUGCuGCgAGUUgGCCGGUGCagauucaucaaACGGCGa- -3'
miRNA:   3'- -ACG-CGgUCAA-CGGCCACG-----------UGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 1341 0.67 0.496084
Target:  5'- cGCGCCAGgcggcgcGCCaaGGaGCACGuCAUGc -3'
miRNA:   3'- aCGCGGUCaa-----CGG--CCaCGUGCuGUAC- -5'
17206 5' -56.8 NC_004333.2 + 47490 0.67 0.485708
Target:  5'- cGCGCUgaacgAGgcGCCGGccgGCGCGACc-- -3'
miRNA:   3'- aCGCGG-----UCaaCGGCCa--CGUGCUGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.