miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17207 3' -58.7 NC_004333.2 + 47574 0.66 0.573123
Target:  5'- ----aUGUaCUggUCGCGCCGGCCGGCGc -3'
miRNA:   3'- ggcuaGCA-GA--GGUGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 39672 0.66 0.572074
Target:  5'- gCCGAggcggcgCGcUUCCugGUCGGCCugccugcgccacuGACGAc -3'
miRNA:   3'- -GGCUa------GCaGAGGugCGGCCGG-------------CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 26294 0.66 0.562648
Target:  5'- aCCGcgcCGUCgaugCGaaaGCCGGUCGACGAc -3'
miRNA:   3'- -GGCua-GCAGag--GUg--CGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 7881 0.66 0.562648
Target:  5'- gCGAgcuaaacuacUCG--UCCGCGCuCGGCCuGGCGAa -3'
miRNA:   3'- gGCU----------AGCagAGGUGCG-GCCGG-CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 15285 0.66 0.552224
Target:  5'- aCGGcCGUCUgaCCGgccugcUGCCGGCCGuGCGGa -3'
miRNA:   3'- gGCUaGCAGA--GGU------GCGGCCGGC-UGCU- -5'
17207 3' -58.7 NC_004333.2 + 27533 0.66 0.552224
Target:  5'- gUCGAUCGcaagugCCGCGCCGG--GGCGAa -3'
miRNA:   3'- -GGCUAGCaga---GGUGCGGCCggCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 3466 0.66 0.551185
Target:  5'- aCCGAag--CUCCcgcgacgacggcgACGCCGGUCGACa- -3'
miRNA:   3'- -GGCUagcaGAGG-------------UGCGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 37337 0.66 0.54186
Target:  5'- gUCGAUCGgaaagaGCGCCGcGCCGuACGGg -3'
miRNA:   3'- -GGCUAGCagagg-UGCGGC-CGGC-UGCU- -5'
17207 3' -58.7 NC_004333.2 + 20233 0.66 0.54186
Target:  5'- gCGAUCGa--CCGCGaCUGGCCuACGAu -3'
miRNA:   3'- gGCUAGCagaGGUGC-GGCCGGcUGCU- -5'
17207 3' -58.7 NC_004333.2 + 11351 0.66 0.531561
Target:  5'- gCGGuUCGUCgucaCCuuGCCGcGCuCGACGAg -3'
miRNA:   3'- gGCU-AGCAGa---GGugCGGC-CG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 12394 0.66 0.531561
Target:  5'- gCGAaCGUCaacCCGCGCgaGGCUGGCGc -3'
miRNA:   3'- gGCUaGCAGa--GGUGCGg-CCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 12530 0.66 0.531561
Target:  5'- cCCGggCGU------GCCGGCCGACGAc -3'
miRNA:   3'- -GGCuaGCAgaggugCGGCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 1536 0.66 0.525415
Target:  5'- gUGAUCGUCagcggCACcucguugaacacgaaGCCGGCCGACa- -3'
miRNA:   3'- gGCUAGCAGag---GUG---------------CGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 18630 0.67 0.511183
Target:  5'- uUCGGauUCGcCgCCGCGCCGGCUGcCGc -3'
miRNA:   3'- -GGCU--AGCaGaGGUGCGGCCGGCuGCu -5'
17207 3' -58.7 NC_004333.2 + 18673 0.67 0.511183
Target:  5'- gCCGcccgCGcCUgCCGCGCCGGUCGuuuguugcACGAa -3'
miRNA:   3'- -GGCua--GCaGA-GGUGCGGCCGGC--------UGCU- -5'
17207 3' -58.7 NC_004333.2 + 37586 0.67 0.511183
Target:  5'- aCGAcUGaUCUUCACGUggccgUGGCCGGCGGc -3'
miRNA:   3'- gGCUaGC-AGAGGUGCG-----GCCGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 24822 0.67 0.510173
Target:  5'- gCGAUCGUCgCCGCGUucgugagCGGCUucucgaccgauGACGGg -3'
miRNA:   3'- gGCUAGCAGaGGUGCG-------GCCGG-----------CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 25748 0.67 0.501117
Target:  5'- gCUGAUCagGUCgCCGCGUucgcgaCGGCCGGCa- -3'
miRNA:   3'- -GGCUAG--CAGaGGUGCG------GCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 22705 0.67 0.501117
Target:  5'- cCUGggCGUCaucaUCCAgCGCacaGGCgCGACGAa -3'
miRNA:   3'- -GGCuaGCAG----AGGU-GCGg--CCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 20514 0.67 0.501117
Target:  5'- gCCGGcCGcCgCCGCGCCGcucGCUGGCGGc -3'
miRNA:   3'- -GGCUaGCaGaGGUGCGGC---CGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.