miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 1321 0.66 0.803574
Target:  5'- -gGAgcACGUcAUGCCGUugAUCGaAGGCa -3'
miRNA:   3'- ggCU--UGCAcUGCGGCGugUAGC-UCUG- -5'
17208 3' -53.8 NC_004333.2 + 22537 0.66 0.803574
Target:  5'- -aGAACGUGAUGuuGCcgaGCGaCGAGcGCg -3'
miRNA:   3'- ggCUUGCACUGCggCG---UGUaGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 22301 0.66 0.803574
Target:  5'- aCGAACGUccaauCGUCGgACAgaccCGAGGCg -3'
miRNA:   3'- gGCUUGCAcu---GCGGCgUGUa---GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 37119 0.66 0.803574
Target:  5'- gCgGGGCGUGcucgaagcgcucACGCCGCACGaCGcGAUc -3'
miRNA:   3'- -GgCUUGCAC------------UGCGGCGUGUaGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 15880 0.66 0.793862
Target:  5'- gCGAGCGaGcCGCCGUGaccgcCAUCGuAGACg -3'
miRNA:   3'- gGCUUGCaCuGCGGCGU-----GUAGC-UCUG- -5'
17208 3' -53.8 NC_004333.2 + 5260 0.66 0.773936
Target:  5'- gUCGAACGUGAUGCgauacgggggcgUGCuCAUC-AGGCg -3'
miRNA:   3'- -GGCUUGCACUGCG------------GCGuGUAGcUCUG- -5'
17208 3' -53.8 NC_004333.2 + 45796 0.66 0.773936
Target:  5'- aUCGGcACGUucGCGCCGgGC-UCGAGAUg -3'
miRNA:   3'- -GGCU-UGCAc-UGCGGCgUGuAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 19248 0.66 0.773936
Target:  5'- gCUGGACGUGACGaacaUGCACGcaucCGGcGACc -3'
miRNA:   3'- -GGCUUGCACUGCg---GCGUGUa---GCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 13605 0.66 0.773936
Target:  5'- gCCGccGGCGgcaACGCCGCgagcACGUCG-GACg -3'
miRNA:   3'- -GGC--UUGCac-UGCGGCG----UGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 20642 0.66 0.773936
Target:  5'- gCGAGCGUcgcaacGGCGCUGCGCcaguggcagGAGGCg -3'
miRNA:   3'- gGCUUGCA------CUGCGGCGUGuag------CUCUG- -5'
17208 3' -53.8 NC_004333.2 + 39256 0.66 0.773936
Target:  5'- cCCGAGCGgccggcaGGCGCaCGCGCG-CGcGAUc -3'
miRNA:   3'- -GGCUUGCa------CUGCG-GCGUGUaGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 3029 0.66 0.773936
Target:  5'- aCGGGCGUcACGCuCGCGCAgcugCaGGGCu -3'
miRNA:   3'- gGCUUGCAcUGCG-GCGUGUa---GcUCUG- -5'
17208 3' -53.8 NC_004333.2 + 38972 0.66 0.767839
Target:  5'- cCCGuguuCGUGAaccgGCCgaucgacccgaacugGCAUGUCGAGGCg -3'
miRNA:   3'- -GGCuu--GCACUg---CGG---------------CGUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 700 0.66 0.763745
Target:  5'- gCGAuCGUGcCGCCGC-CcgCGAG-Cg -3'
miRNA:   3'- gGCUuGCACuGCGGCGuGuaGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 19557 0.66 0.763745
Target:  5'- gCCGGucgcACGgucGGCGCgGCACAagGGGAa -3'
miRNA:   3'- -GGCU----UGCa--CUGCGgCGUGUagCUCUg -5'
17208 3' -53.8 NC_004333.2 + 33286 0.66 0.762718
Target:  5'- gCCGAGCGcGcGCGuuGCgucggccGCAUCGAGcCa -3'
miRNA:   3'- -GGCUUGCaC-UGCggCG-------UGUAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 9337 0.67 0.753417
Target:  5'- gCCGAAUccGcagaaggcuAUGCCGCACGcggCGAGGCg -3'
miRNA:   3'- -GGCUUGcaC---------UGCGGCGUGUa--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 332 0.67 0.753417
Target:  5'- cUCGGcgGCGUGACGaC-CACAUCGAacGGCa -3'
miRNA:   3'- -GGCU--UGCACUGCgGcGUGUAGCU--CUG- -5'
17208 3' -53.8 NC_004333.2 + 44245 0.67 0.752377
Target:  5'- gCgGAACGUGaaacaguaggcgcGCGUCGUcggauCGUCGAGAUa -3'
miRNA:   3'- -GgCUUGCAC-------------UGCGGCGu----GUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 41331 0.67 0.74716
Target:  5'- aUGGACGUGACGCgCgaguguguacgugugGCGC-UCGAGcACg -3'
miRNA:   3'- gGCUUGCACUGCG-G---------------CGUGuAGCUC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.