miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 5' -56 NC_004333.2 + 48175 0.66 0.642837
Target:  5'- gCGCGgUGCGCGcgcccgguuGCCGccuGCGCCuCGUc -3'
miRNA:   3'- -GCGUgACGCGC---------UGGUu--UGCGGuGCAu -5'
17210 5' -56 NC_004333.2 + 48158 0.67 0.565288
Target:  5'- aCGUAUgugagGCGCGA--GAACGCgCACGUGa -3'
miRNA:   3'- -GCGUGa----CGCGCUggUUUGCG-GUGCAU- -5'
17210 5' -56 NC_004333.2 + 47184 0.69 0.459681
Target:  5'- aCGCGCUGcCGCGcagcacgagGCaCAAGuCGCCGCGa- -3'
miRNA:   3'- -GCGUGAC-GCGC---------UG-GUUU-GCGGUGCau -5'
17210 5' -56 NC_004333.2 + 47071 0.66 0.631709
Target:  5'- gCGCGCaacgugaGCGCGAUCuuucGCGCCGCu-- -3'
miRNA:   3'- -GCGUGa------CGCGCUGGuu--UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 46900 0.67 0.543497
Target:  5'- gCGCcuguguucauGCUGCaGCGcCgCGAGCGCCGCGa- -3'
miRNA:   3'- -GCG----------UGACG-CGCuG-GUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 46475 0.7 0.365484
Target:  5'- aCGUACUGCGCGACUAuuacaAAgGCUGCa-- -3'
miRNA:   3'- -GCGUGACGCGCUGGU-----UUgCGGUGcau -5'
17210 5' -56 NC_004333.2 + 45662 0.66 0.598368
Target:  5'- gCGCGCUGCGCaugcaccuACCGAGCggGCgCGCGa- -3'
miRNA:   3'- -GCGUGACGCGc-------UGGUUUG--CG-GUGCau -5'
17210 5' -56 NC_004333.2 + 45120 0.71 0.355966
Target:  5'- cCGCGCgguguucagcguuUGCGCG-CCGccAGCGCCACGc- -3'
miRNA:   3'- -GCGUG-------------ACGCGCuGGU--UUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 45008 0.68 0.511358
Target:  5'- gCGCGCUGUcCGGCCGcuCGaCCGCGc- -3'
miRNA:   3'- -GCGUGACGcGCUGGUuuGC-GGUGCau -5'
17210 5' -56 NC_004333.2 + 43900 0.94 0.008104
Target:  5'- uCGCACUGCGCGA-CAAACGCCACGUAg -3'
miRNA:   3'- -GCGUGACGCGCUgGUUUGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 43463 0.66 0.631709
Target:  5'- gGCgGCUGCGgGACCAuAGCGauugCGCGUu -3'
miRNA:   3'- gCG-UGACGCgCUGGU-UUGCg---GUGCAu -5'
17210 5' -56 NC_004333.2 + 42093 0.75 0.192265
Target:  5'- uCGUGCUGCGCGACgAGGCGUguCGCGa- -3'
miRNA:   3'- -GCGUGACGCGCUGgUUUGCG--GUGCau -5'
17210 5' -56 NC_004333.2 + 42036 0.68 0.480035
Target:  5'- cCGCACUG-GCGAC---ACGUCAUGUGc -3'
miRNA:   3'- -GCGUGACgCGCUGguuUGCGGUGCAU- -5'
17210 5' -56 NC_004333.2 + 42015 0.66 0.631709
Target:  5'- uGCGCgugaagcGCGCGGCCAAcgaGCGggGCGUGc -3'
miRNA:   3'- gCGUGa------CGCGCUGGUU---UGCggUGCAU- -5'
17210 5' -56 NC_004333.2 + 41899 0.73 0.264333
Target:  5'- -cCGCU-CGCGGCCGGGCGCCGuCGUGc -3'
miRNA:   3'- gcGUGAcGCGCUGGUUUGCGGU-GCAU- -5'
17210 5' -56 NC_004333.2 + 41650 0.66 0.631709
Target:  5'- gGCGCggGCuGCGGCCGuACGCCGg--- -3'
miRNA:   3'- gCGUGa-CG-CGCUGGUuUGCGGUgcau -5'
17210 5' -56 NC_004333.2 + 41431 0.67 0.57627
Target:  5'- gCGguCggGCGCGugCucGAGCGCCACa-- -3'
miRNA:   3'- -GCguGa-CGCGCugG--UUUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 41203 0.66 0.642837
Target:  5'- cCGCACUGCGUGAgCgGAACgGCCu---- -3'
miRNA:   3'- -GCGUGACGCGCU-GgUUUG-CGGugcau -5'
17210 5' -56 NC_004333.2 + 41019 0.69 0.430038
Target:  5'- uCGC-CUGCcguGCGACCGAcugugGCGUCGCGa- -3'
miRNA:   3'- -GCGuGACG---CGCUGGUU-----UGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 40679 0.68 0.505023
Target:  5'- gCGCACU-CGCGACCGcaAAgaacaccaacccgauCGCCGCGa- -3'
miRNA:   3'- -GCGUGAcGCGCUGGU--UU---------------GCGGUGCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.