miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 6506 0.66 0.825954
Target:  5'- cGUGGaCAUgguaaUGUGCGAUUUGCCguACGGCa -3'
miRNA:   3'- aCGUC-GUG-----GUAUGCUAGAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31429 0.66 0.825954
Target:  5'- cGCGGCugCGUcgcucggcaGCGGUCUgaugaaGCUggcCGGCa -3'
miRNA:   3'- aCGUCGugGUA---------UGCUAGA------UGGu--GCCG- -5'
17213 3' -52.7 NC_004333.2 + 47281 0.66 0.825954
Target:  5'- aGUAGCGcgcCCGUcgcgGCGAcuugugccUCUGCUgcGCGGCa -3'
miRNA:   3'- aCGUCGU---GGUA----UGCU--------AGAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11513 0.66 0.825954
Target:  5'- cGCAGgaaUACCAcacaGCGGUCgaaggcgacgUGCUGCGGCa -3'
miRNA:   3'- aCGUC---GUGGUa---UGCUAG----------AUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 24290 0.66 0.825954
Target:  5'- gGCaAGCGCCGUuuuACGG-CgGCCagGCGGCc -3'
miRNA:   3'- aCG-UCGUGGUA---UGCUaGaUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 41493 0.66 0.825954
Target:  5'- aGCAGCGCCuguuCGAUCaugugCGCGuGCu -3'
miRNA:   3'- aCGUCGUGGuau-GCUAGaug--GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 441 0.66 0.825954
Target:  5'- gGCAGUGCgGaACGcaAUCU-UCACGGCg -3'
miRNA:   3'- aCGUCGUGgUaUGC--UAGAuGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29045 0.66 0.825954
Target:  5'- aGCAccGCGCCGcccACGAUCgcGCCGaguUGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUAGa-UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 28944 0.66 0.825013
Target:  5'- cGCcgaGGCACgCGUuguucacGCGGUCgaaCGCGGCg -3'
miRNA:   3'- aCG---UCGUG-GUA-------UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 38230 0.66 0.816453
Target:  5'- aGCGGCguGCCAa--GAUCggcgGCCGgguCGGCg -3'
miRNA:   3'- aCGUCG--UGGUaugCUAGa---UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 18540 0.66 0.816453
Target:  5'- gGCGGCaACCcggGUGCGG-CaGCCggcGCGGCg -3'
miRNA:   3'- aCGUCG-UGG---UAUGCUaGaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30425 0.66 0.816453
Target:  5'- cGC-GCGCCGUaGCGA-CUGCCuCGcGCc -3'
miRNA:   3'- aCGuCGUGGUA-UGCUaGAUGGuGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 28837 0.66 0.816453
Target:  5'- cGCcGCGacCCGcGCGGUCga-CGCGGCg -3'
miRNA:   3'- aCGuCGU--GGUaUGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 25942 0.66 0.816453
Target:  5'- cGCGGCGCgAUGCcggCgGCCaguacGCGGCg -3'
miRNA:   3'- aCGUCGUGgUAUGcuaGaUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13816 0.66 0.816453
Target:  5'- cGCGGCGuCC-UACGcgCUcgACUucaACGGCa -3'
miRNA:   3'- aCGUCGU-GGuAUGCuaGA--UGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 41716 0.66 0.816453
Target:  5'- gGCGGCACgGcGCGAUCaACgAggagauCGGCg -3'
miRNA:   3'- aCGUCGUGgUaUGCUAGaUGgU------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 34194 0.66 0.816453
Target:  5'- aGCAGUaACgGUuucACGAUCaaUGCgACGGCc -3'
miRNA:   3'- aCGUCG-UGgUA---UGCUAG--AUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30000 0.66 0.816453
Target:  5'- cGCgAGCACCAUGCGGc--GCCGCu-- -3'
miRNA:   3'- aCG-UCGUGGUAUGCUagaUGGUGccg -5'
17213 3' -52.7 NC_004333.2 + 12286 0.66 0.806747
Target:  5'- -aCGGCACCGgcgGCGcgC-AUUGCGGCg -3'
miRNA:   3'- acGUCGUGGUa--UGCuaGaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 35006 0.66 0.806747
Target:  5'- cUGCcGUACCAUugcCGGUCgcgccgaacACCAuCGGCg -3'
miRNA:   3'- -ACGuCGUGGUAu--GCUAGa--------UGGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.