miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 47875 0.71 0.485894
Target:  5'- gGCGGCgcgcugcacgaucaGCC-UGCGAUCUGCagguauucgagCGCGGCg -3'
miRNA:   3'- aCGUCG--------------UGGuAUGCUAGAUG-----------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 47822 0.69 0.655948
Target:  5'- gUGCuuGGCACagucggccggggUGUACGAg--GCCACGGCg -3'
miRNA:   3'- -ACG--UCGUG------------GUAUGCUagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 47467 0.7 0.565469
Target:  5'- aGCAacGCGCCGgcgGCGA-CUGCCGCgcugaacgaGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUaGAUGGUG---------CCG- -5'
17213 3' -52.7 NC_004333.2 + 47281 0.66 0.825954
Target:  5'- aGUAGCGcgcCCGUcgcgGCGAcuugugccUCUGCUgcGCGGCa -3'
miRNA:   3'- aCGUCGU---GGUA----UGCU--------AGAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 46945 0.66 0.785743
Target:  5'- cGCGGCACU---CGGUUUcuuucgaGCgCACGGCg -3'
miRNA:   3'- aCGUCGUGGuauGCUAGA-------UG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 46915 0.68 0.700963
Target:  5'- cUGCAGCGCC--GCGAgc-GCCGCGaaGCc -3'
miRNA:   3'- -ACGUCGUGGuaUGCUagaUGGUGC--CG- -5'
17213 3' -52.7 NC_004333.2 + 46352 0.67 0.723091
Target:  5'- cGUuauGCGCCGcUGCgGAUUUGgCGCGGCc -3'
miRNA:   3'- aCGu--CGUGGU-AUG-CUAGAUgGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 46110 0.66 0.786761
Target:  5'- gGCcgAGCGCgGUGCGc---GCUACGGCa -3'
miRNA:   3'- aCG--UCGUGgUAUGCuagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 45094 0.68 0.667267
Target:  5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3'
miRNA:   3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 44983 1.13 0.000778
Target:  5'- cUGCAGCACCAUACGAUCUACCACGGCg -3'
miRNA:   3'- -ACGUCGUGGUAUGCUAGAUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 44491 0.68 0.689785
Target:  5'- cGCAcGCACCAgccaGCGA---GCC-CGGCa -3'
miRNA:   3'- aCGU-CGUGGUa---UGCUagaUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 43864 0.69 0.633253
Target:  5'- cGCAGCACC---CGGU--GCuCGCGGCa -3'
miRNA:   3'- aCGUCGUGGuauGCUAgaUG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 43306 0.73 0.427636
Target:  5'- aUGCGGCGCgggCAUGCGA---ACgCACGGCa -3'
miRNA:   3'- -ACGUCGUG---GUAUGCUagaUG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 41716 0.66 0.816453
Target:  5'- gGCGGCACgGcGCGAUCaACgAggagauCGGCg -3'
miRNA:   3'- aCGUCGUGgUaUGCUAGaUGgU------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 41709 0.67 0.755529
Target:  5'- cGCAGCccgcGCCcgACaAUCUGCCGCcagaGCa -3'
miRNA:   3'- aCGUCG----UGGuaUGcUAGAUGGUGc---CG- -5'
17213 3' -52.7 NC_004333.2 + 41493 0.66 0.825954
Target:  5'- aGCAGCGCCuguuCGAUCaugugCGCGuGCu -3'
miRNA:   3'- aCGUCGUGGuau-GCUAGaug--GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 39350 0.68 0.678549
Target:  5'- aGCAGCcaACC-UGCGAUCgcGCgCGCGuGCg -3'
miRNA:   3'- aCGUCG--UGGuAUGCUAGa-UG-GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 39073 0.68 0.700963
Target:  5'- cUGCAGCGCCu--CGAcaUGCCAguucgggucgauCGGCc -3'
miRNA:   3'- -ACGUCGUGGuauGCUagAUGGU------------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 38388 0.68 0.667267
Target:  5'- gGguGCGCCGgcgugACGccg-GCCACGGUc -3'
miRNA:   3'- aCguCGUGGUa----UGCuagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 38230 0.66 0.816453
Target:  5'- aGCGGCguGCCAa--GAUCggcgGCCGgguCGGCg -3'
miRNA:   3'- aCGUCG--UGGUaugCUAGa---UGGU---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.