miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 5' -64.1 NC_004333.2 + 25487 0.66 0.293363
Target:  5'- aCGGCCGCcgcCGGCaCGCuGCa-GGCGCg- -3'
miRNA:   3'- -GCCGGCGa--GCUG-GCG-CGcaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 25199 0.66 0.293363
Target:  5'- aGGCCGCgaaCGugCGCGcCGccGUGCUc -3'
miRNA:   3'- gCCGGCGa--GCugGCGC-GCacCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 11055 0.66 0.293363
Target:  5'- gGGUCGaauuCUCGACCGC-CG-GGCGUg- -3'
miRNA:   3'- gCCGGC----GAGCUGGCGcGCaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 5101 0.66 0.286457
Target:  5'- cCGGCCGCcUGGCCGCcUGUcaaGCGCg- -3'
miRNA:   3'- -GCCGGCGaGCUGGCGcGCAc--CGCGac -5'
17213 5' -64.1 NC_004333.2 + 18485 0.66 0.286457
Target:  5'- -cGCCGC-CGAUCGCGa--GGCGUUGc -3'
miRNA:   3'- gcCGGCGaGCUGGCGCgcaCCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 18588 0.66 0.286457
Target:  5'- cCGGCUGCgaaGGCCGCugcaGCGUccgucGGCGUg- -3'
miRNA:   3'- -GCCGGCGag-CUGGCG----CGCA-----CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 41743 0.66 0.286457
Target:  5'- uCGGCgCGggCGACuCGCGCGccgGGCuaUGg -3'
miRNA:   3'- -GCCG-GCgaGCUG-GCGCGCa--CCGcgAC- -5'
17213 5' -64.1 NC_004333.2 + 42291 0.66 0.27303
Target:  5'- cCGGCCGCaaggugcCGACCGagGCGUaucGcGUGCUGu -3'
miRNA:   3'- -GCCGGCGa------GCUGGCg-CGCA---C-CGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 10268 0.66 0.27303
Target:  5'- aCGGCCGCa----UGCGCGUGcGCGaCUGc -3'
miRNA:   3'- -GCCGGCGagcugGCGCGCAC-CGC-GAC- -5'
17213 5' -64.1 NC_004333.2 + 6663 0.66 0.262017
Target:  5'- uCGGCgCGCUCGagcaggcgcgcauccGCCGCuucacguGCGgGGCGCa- -3'
miRNA:   3'- -GCCG-GCGAGC---------------UGGCG-------CGCaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 41514 0.66 0.260112
Target:  5'- aCGGCCGaCUCGcCCGCGuCGagcaGCGcCUGu -3'
miRNA:   3'- -GCCGGC-GAGCuGGCGC-GCac--CGC-GAC- -5'
17213 5' -64.1 NC_004333.2 + 38838 0.66 0.260112
Target:  5'- uCGGCaaGCUCGgcgauGCCGCuCGUGGcCGCUu -3'
miRNA:   3'- -GCCGg-CGAGC-----UGGCGcGCACC-GCGAc -5'
17213 5' -64.1 NC_004333.2 + 9539 0.66 0.260112
Target:  5'- uCGGCgGCggugCGGcacCCGCGCcUGGUGCg- -3'
miRNA:   3'- -GCCGgCGa---GCU---GGCGCGcACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 7505 0.67 0.25571
Target:  5'- gGGCCGuCUCGugcagcucugggcGCCGCGCGUcgaaggcaaggacacGGCGacCUGc -3'
miRNA:   3'- gCCGGC-GAGC-------------UGGCGCGCA---------------CCGC--GAC- -5'
17213 5' -64.1 NC_004333.2 + 2764 0.67 0.253842
Target:  5'- uCGGCCugUCGGCCGC-CGccGGCGCg- -3'
miRNA:   3'- -GCCGGcgAGCUGGCGcGCa-CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 38672 0.67 0.253842
Target:  5'- gCGGCgCGCcCGGCUGUaGC-UGGCGCUu -3'
miRNA:   3'- -GCCG-GCGaGCUGGCG-CGcACCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 20008 0.67 0.253842
Target:  5'- aCGGCgGCUCG-CCGCcCG-GcGCGCUc -3'
miRNA:   3'- -GCCGgCGAGCuGGCGcGCaC-CGCGAc -5'
17213 5' -64.1 NC_004333.2 + 26365 0.67 0.241676
Target:  5'- cCGGCuuuCGCaUCGACgGCGCGgUGcGCGCc- -3'
miRNA:   3'- -GCCG---GCG-AGCUGgCGCGC-AC-CGCGac -5'
17213 5' -64.1 NC_004333.2 + 15498 0.67 0.241676
Target:  5'- gGGCUGCUCGcggcggucaccgGCgGCGCGUcaaGCGCg- -3'
miRNA:   3'- gCCGGCGAGC------------UGgCGCGCAc--CGCGac -5'
17213 5' -64.1 NC_004333.2 + 28227 0.67 0.239301
Target:  5'- cCGGgCGCgucacggugaccgUGACgCGCGCGcGGCGCUc -3'
miRNA:   3'- -GCCgGCGa------------GCUG-GCGCGCaCCGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.