miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17215 5' -53.1 NC_004333.2 + 20513 0.66 0.821151
Target:  5'- cGGCGCaggcuucgcgccgccGAACGUGUuuuCGAagGCGGUGa- -3'
miRNA:   3'- -CCGCG---------------CUUGCACG---GCUagCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 18388 0.66 0.818317
Target:  5'- cGGCGUGAggaucgugcgcacgcGCGUGCCGGcgaagaacuUCGCcuugaucguuugcaGGUGUGc -3'
miRNA:   3'- -CCGCGCU---------------UGCACGGCU---------AGCG--------------CUAUAU- -5'
17215 5' -53.1 NC_004333.2 + 25649 0.66 0.817369
Target:  5'- aGCGCGGucgaaaGCGUcuuGCCGGccgUCGCGAa--- -3'
miRNA:   3'- cCGCGCU------UGCA---CGGCU---AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 25750 0.66 0.817369
Target:  5'- cGGCGUGAAg--GUCGGUUGCGGg--- -3'
miRNA:   3'- -CCGCGCUUgcaCGGCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 45766 0.66 0.817369
Target:  5'- aGGCGUGcguuGugGUaGCUGAUCGCGc---- -3'
miRNA:   3'- -CCGCGC----UugCA-CGGCUAGCGCuauau -5'
17215 5' -53.1 NC_004333.2 + 23484 0.66 0.813554
Target:  5'- cGGCGgGuACGUGCCGGgcuaccaguacggCGUGAc--- -3'
miRNA:   3'- -CCGCgCuUGCACGGCUa------------GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 6669 0.66 0.807773
Target:  5'- cGGCGCuGGGCGgcgcGCCGuggCgGCGAUGc- -3'
miRNA:   3'- -CCGCG-CUUGCa---CGGCua-G-CGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 11901 0.66 0.807773
Target:  5'- cGGCGCaagcugGAGCGcGCCG-UCGCGcugAUGg -3'
miRNA:   3'- -CCGCG------CUUGCaCGGCuAGCGCua-UAU- -5'
17215 5' -53.1 NC_004333.2 + 30650 0.66 0.807773
Target:  5'- cGGCGa-AGCG-GUCGAugUCGCGGUGUu -3'
miRNA:   3'- -CCGCgcUUGCaCGGCU--AGCGCUAUAu -5'
17215 5' -53.1 NC_004333.2 + 28930 0.66 0.807773
Target:  5'- cGGUGCGuAGCGggcGCCGAggcaCGCGuUGUu -3'
miRNA:   3'- -CCGCGC-UUGCa--CGGCUa---GCGCuAUAu -5'
17215 5' -53.1 NC_004333.2 + 28755 0.66 0.794018
Target:  5'- uGCGCGAGCGccgcgucgaccgcGCgGGUCGCGGc--- -3'
miRNA:   3'- cCGCGCUUGCa------------CGgCUAGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 11708 0.66 0.788016
Target:  5'- aGCGcCGGgcgGCGUGCUGGcguccugCGCGAUGUc -3'
miRNA:   3'- cCGC-GCU---UGCACGGCUa------GCGCUAUAu -5'
17215 5' -53.1 NC_004333.2 + 33521 0.66 0.788016
Target:  5'- cGGCGCGccgcugccAAUGcUGCCGGacUCGCGGc--- -3'
miRNA:   3'- -CCGCGC--------UUGC-ACGGCU--AGCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 25054 0.66 0.787009
Target:  5'- cGGCGCGGACGcagacguUGC-GcUCGCGAUc-- -3'
miRNA:   3'- -CCGCGCUUGC-------ACGgCuAGCGCUAuau -5'
17215 5' -53.1 NC_004333.2 + 33358 0.66 0.787009
Target:  5'- cGGCGCGccguCGUGgaacgccugcugcCCGAUCGCG-UAg- -3'
miRNA:   3'- -CCGCGCuu--GCAC-------------GGCUAGCGCuAUau -5'
17215 5' -53.1 NC_004333.2 + 11987 0.66 0.777877
Target:  5'- uGGCGCGcGCGccgcugcgcaUGCCGGgcCGCGAc--- -3'
miRNA:   3'- -CCGCGCuUGC----------ACGGCUa-GCGCUauau -5'
17215 5' -53.1 NC_004333.2 + 4725 0.66 0.777877
Target:  5'- cGCGCGccGGCcUGCCcgucgccauGAUCGCGAUGg- -3'
miRNA:   3'- cCGCGC--UUGcACGG---------CUAGCGCUAUau -5'
17215 5' -53.1 NC_004333.2 + 37807 0.67 0.767581
Target:  5'- cGGCGCGAuGCGaaGCgCG-UCGCGAUcgAg -3'
miRNA:   3'- -CCGCGCU-UGCa-CG-GCuAGCGCUAuaU- -5'
17215 5' -53.1 NC_004333.2 + 8562 0.67 0.767581
Target:  5'- -aCGCGGACGUuguggcuggcucGCCG-UCGCGAgGUAc -3'
miRNA:   3'- ccGCGCUUGCA------------CGGCuAGCGCUaUAU- -5'
17215 5' -53.1 NC_004333.2 + 20638 0.67 0.767581
Target:  5'- cGGCGCGAcccgACGcGCCGAcgaUCaGCGGc--- -3'
miRNA:   3'- -CCGCGCU----UGCaCGGCU---AG-CGCUauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.